Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00601
         (615 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q16LL3 Cluster: Putative uncharacterized protein; n=2; ...    46   7e-04
UniRef50_Q9VJK9 Cluster: CG4455-PA; n=2; Sophophora|Rep: CG4455-...    44   0.002
UniRef50_Q5CLC8 Cluster: Multi-pass transmembrane protein; n=3; ...    35   1.3  
UniRef50_A4GN30 Cluster: Putative uncharacterized protein; n=5; ...    33   7.1  
UniRef50_Q0KHU2 Cluster: CG1691-PI, isoform I; n=10; Endopterygo...    33   7.1  
UniRef50_A7ARD5 Cluster: Membrane protein, putative; n=1; Babesi...    32   9.4  
UniRef50_A2DZI8 Cluster: Zinc finger, C2H2 type family protein; ...    32   9.4  
UniRef50_Q5PK28 Cluster: UPF0391 membrane protein ytjA; n=36; Ga...    32   9.4  

>UniRef50_Q16LL3 Cluster: Putative uncharacterized protein; n=2;
           Aedes aegypti|Rep: Putative uncharacterized protein -
           Aedes aegypti (Yellowfever mosquito)
          Length = 175

 Score = 46.0 bits (104), Expect = 7e-04
 Identities = 16/40 (40%), Positives = 28/40 (70%)
 Frame = +1

Query: 256 ISAWGIVFLVVALVVAGMGFYYFSMCYPYFCHRQEKYHIM 375
           ISAWGI+ +V+ +++ G G Y+  +CYP  C ++  Y++M
Sbjct: 95  ISAWGIISIVMFVIMIGAGAYWGFICYPLVCKKERNYNMM 134


>UniRef50_Q9VJK9 Cluster: CG4455-PA; n=2; Sophophora|Rep: CG4455-PA
           - Drosophila melanogaster (Fruit fly)
          Length = 126

 Score = 44.4 bits (100), Expect = 0.002
 Identities = 19/54 (35%), Positives = 30/54 (55%)
 Frame = +1

Query: 214 PGYTFTEHHKAWCGISAWGIVFLVVALVVAGMGFYYFSMCYPYFCHRQEKYHIM 375
           P  T  E+  +  GIS +GI+ ++  ++V  + FYY  +CYP  C   +KY  M
Sbjct: 43  PPQTAKEYLDSRPGISTFGIIAIIFTVIVLCLVFYYGIICYPLLCRDDKKYRFM 96


>UniRef50_Q5CLC8 Cluster: Multi-pass transmembrane protein; n=3;
           Cryptosporidium|Rep: Multi-pass transmembrane protein -
           Cryptosporidium hominis
          Length = 343

 Score = 35.1 bits (77), Expect = 1.3
 Identities = 21/77 (27%), Positives = 38/77 (49%)
 Frame = +1

Query: 226 FTEHHKAWCGISAWGIVFLVVALVVAGMGFYYFSMCYPYFCHRQEKYHIMGTPTMA*PCE 405
           F++    WC +  +GIV   V+L++ G+ F+Y           Q  Y ++   T+A   E
Sbjct: 186 FSQTKGDWC-LYNFGIVCEAVSLIMYGISFFYVESYADVGVGEQYAYWMLTLFTLAGVSE 244

Query: 406 IQDQFSGLT*YFMTFYA 456
           +   F+G   +F+ F+A
Sbjct: 245 LMMLFTGFGSFFILFFA 261


>UniRef50_A4GN30 Cluster: Putative uncharacterized protein; n=5;
           Helicobacter|Rep: Putative uncharacterized protein -
           Helicobacter pylori (Campylobacter pylori)
          Length = 735

 Score = 32.7 bits (71), Expect = 7.1
 Identities = 18/44 (40%), Positives = 19/44 (43%)
 Frame = +2

Query: 137 SSNRGNSKYGSGNQGLGKAKPYGGTSPGIPSQSTTRRGVEYLHG 268
           SS  G    GSG  G+G A  YG TS    S  T   GV    G
Sbjct: 119 SSKNGKGFSGSGASGMGYASGYGDTSNNAGSNGTIANGVNGTSG 162


>UniRef50_Q0KHU2 Cluster: CG1691-PI, isoform I; n=10;
           Endopterygota|Rep: CG1691-PI, isoform I - Drosophila
           melanogaster (Fruit fly)
          Length = 588

 Score = 32.7 bits (71), Expect = 7.1
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -3

Query: 349 DKNKGSTLRNNRNPFLPLPVPRLRTQFPMQI 257
           DKN+  + RN RNP+  +P P  +  FP++I
Sbjct: 67  DKNQRRSQRNQRNPYPGMPGPGRQADFPLRI 97


>UniRef50_A7ARD5 Cluster: Membrane protein, putative; n=1; Babesia
           bovis|Rep: Membrane protein, putative - Babesia bovis
          Length = 969

 Score = 32.3 bits (70), Expect = 9.4
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 239 WCSVKVYPGKCLRTV*PSLDPGSHY 165
           WC VK+YPG+ L  + PSL+  + Y
Sbjct: 337 WCDVKLYPGRKLSIILPSLNESNVY 361


>UniRef50_A2DZI8 Cluster: Zinc finger, C2H2 type family protein;
           n=1; Trichomonas vaginalis G3|Rep: Zinc finger, C2H2
           type family protein - Trichomonas vaginalis G3
          Length = 319

 Score = 32.3 bits (70), Expect = 9.4
 Identities = 16/34 (47%), Positives = 17/34 (50%)
 Frame = -3

Query: 340 KGSTLRNNRNPFLPLPVPRLRTQFPMQIFHTTPC 239
           K   L  NRNPF P P+    TQ    I HT PC
Sbjct: 121 KIDNLSYNRNPFPPPPIAYSTTQEAAIIVHTCPC 154


>UniRef50_Q5PK28 Cluster: UPF0391 membrane protein ytjA; n=36;
           Gammaproteobacteria|Rep: UPF0391 membrane protein ytjA -
           Salmonella paratyphi-a
          Length = 53

 Score = 32.3 bits (70), Expect = 9.4
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = +1

Query: 265 WGIVFLVVALVVAGMGF 315
           WGI+FLV+AL+ A +GF
Sbjct: 4   WGIIFLVIALIAAALGF 20


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 622,235,228
Number of Sequences: 1657284
Number of extensions: 12720756
Number of successful extensions: 31384
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 30127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31368
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 44392209541
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)