Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00601
(615 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0098 + 4235938-4237113 31 0.96
01_05_0705 + 24424457-24424948,24425520-24425624,24426097-244262... 29 2.9
12_02_0299 - 17051570-17052474,17053542-17053755 28 5.1
04_01_0464 + 6006021-6006082,6006249-6006519 28 5.1
02_05_0635 + 30518833-30520290 28 5.1
08_01_0576 - 5114636-5115151,5115254-5116183,5116898-5117614,511... 28 6.8
07_03_1175 - 24555965-24556117,24557809-24558264,24558270-245584... 28 6.8
03_01_0014 + 113638-113754,113836-113950,114570-114835,115365-11... 28 6.8
02_05_1269 + 35352825-35352888,35353645-35353968,35355062-353551... 28 6.8
10_01_0158 + 1798370-1798381,1798472-1798840,1799031-1799564 27 8.9
03_02_0270 - 7011363-7012302,7013237-7013640,7014264-7014333,701... 27 8.9
>09_02_0098 + 4235938-4237113
Length = 391
Score = 30.7 bits (66), Expect = 0.96
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -1
Query: 222 IPGEVPPYGLAFPRPWFPLPYL-LFP 148
IPG +PP G ++P P P P L LFP
Sbjct: 202 IPGFLPPPGFSYPEPMGPPPLLSLFP 227
>01_05_0705 +
24424457-24424948,24425520-24425624,24426097-24426207,
24426675-24426857,24427066-24427192,24427336-24427397,
24427638-24427724,24428703-24428789,24429210-24429323,
24429507-24429635,24429834-24429896,24430333-24430494,
24430611-24430729,24430786-24431794
Length = 949
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +2
Query: 131 LRSSNRGNSKYGSGNQGLGKAKPYGGTSPGIPSQSTTR 244
L + N + GN LG P GG S G S STT+
Sbjct: 864 LMAVNSTGNYLNQGNSALGFGNPIGGRSTGSLSSSTTQ 901
>12_02_0299 - 17051570-17052474,17053542-17053755
Length = 372
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Frame = -1
Query: 219 PGEVPPYGLAFPRPWF-PLPYLLFP 148
P PP PRPWF P+P+L P
Sbjct: 211 PWPWPPIPFCTPRPWFPPIPFLTPP 235
>04_01_0464 + 6006021-6006082,6006249-6006519
Length = 110
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +2
Query: 155 SKYGSGNQGLGKAKPYGGTSPGIPSQSTTRR 247
S+ G+G+ G G G T PG+ + RR
Sbjct: 49 SERGTGDHGAGSGTEQGATEPGVAGRGELRR 79
>02_05_0635 + 30518833-30520290
Length = 485
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +1
Query: 214 PGYTFTEHHKAWCGISAWGIVFLVVALVVAGMGFYYFSMCYPYFCH 351
P TF EH + W G + F+ L +G+G C PY H
Sbjct: 97 PFATFLEHSRVWPGFEERSVRFMTRLLERSGLG---EETCLPYAQH 139
>08_01_0576 -
5114636-5115151,5115254-5116183,5116898-5117614,
5119630-5119746,5119930-5120295,5121365-5121634
Length = 971
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = -1
Query: 222 IPGEVPPYGLAFPRPWFPLPYL 157
+P VPPYGL P FPLP L
Sbjct: 735 VPPAVPPYGLQ-SMPGFPLPSL 755
>07_03_1175 -
24555965-24556117,24557809-24558264,24558270-24558436,
24558468-24558756,24559620-24559726,24559841-24559909,
24560001-24560109
Length = 449
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/41 (39%), Positives = 18/41 (43%)
Frame = +2
Query: 146 RGNSKYGSGNQGLGKAKPYGGTSPGIPSQSTTRRGVEYLHG 268
RG G+G G G+A YGG G S S LHG
Sbjct: 144 RGGGYAGNGGYG-GRASEYGGYGAGGYSSSGGYNATSVLHG 183
>03_01_0014 +
113638-113754,113836-113950,114570-114835,115365-115575,
115915-115979,118723-118930,119457-119566,119663-119913,
120250-120356,120442-120509,120624-120701,121070-121198,
121341-121481,122297-122344,122648-122743,124071-124183,
124441-124591,124745-124818,124913-125072,125356-125454,
125532-125618,125761-125907
Length = 946
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -2
Query: 242 LWCSVKVYPGKCLRTV*PSLDPGSHYRIYYFLDWSYAKRR 123
LW + P K + L PG ++R++ +DW+ KRR
Sbjct: 441 LWDQTLLSPKKGIFYCVIYLHPGDYHRVHSPVDWNIIKRR 480
>02_05_1269 +
35352825-35352888,35353645-35353968,35355062-35355183,
35355361-35355482,35355651-35355755,35356402-35356765,
35357181-35357321,35357619-35359109
Length = 910
Score = 27.9 bits (59), Expect = 6.8
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +3
Query: 216 RVYLHRAPQGVVWNICMGNCVLSRGTGSGRN 308
+V L +P +W +C GN + +R G N
Sbjct: 223 KVQLKASPSCKIWFVCKGNLICTREVNEGLN 253
>10_01_0158 + 1798370-1798381,1798472-1798840,1799031-1799564
Length = 304
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +1
Query: 274 VFLVVALVVAGMGFYYFSMCYPYFCHRQEK 363
+FLV L +A Y C+PY HR K
Sbjct: 121 LFLVYELDIANALLYLHEECHPYILHRDIK 150
>03_02_0270 -
7011363-7012302,7013237-7013640,7014264-7014333,
7014835-7015331,7015959-7016283,7018060-7018292
Length = 822
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +1
Query: 316 YYFSMCYPYFCHRQ-EKYHIMGTPTMA 393
YY MCYP+FC+ I+G T+A
Sbjct: 262 YYSFMCYPFFCNLYLSCITILGVATIA 288
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,543,949
Number of Sequences: 37544
Number of extensions: 349937
Number of successful extensions: 896
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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