Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00601
         (615 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31048| Best HMM Match : zf-CCHC (HMM E-Value=5.5e-05)               31   0.74 
SB_7678| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.7  
SB_48221| Best HMM Match : Caudal_act (HMM E-Value=5)                  30   1.7  
SB_3703| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.7  
SB_19903| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_28990| Best HMM Match : YABBY (HMM E-Value=0.45)                    28   5.2  
SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_25230| Best HMM Match : NACHT (HMM E-Value=0.0015)                  27   9.1  

>SB_31048| Best HMM Match : zf-CCHC (HMM E-Value=5.5e-05)
          Length = 601

 Score = 31.1 bits (67), Expect = 0.74
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +1

Query: 259 SAWGIVFLVVALVVAGMGFYYF 324
           +AWG  F+V  L+VAGMG + F
Sbjct: 30  NAWGWSFIVPGLIVAGMGIFVF 51


>SB_7678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1432

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -1

Query: 309 HSCHYQCHD*EHNSPCRYSTPRLVVLCEGIP 217
           H  H QCHD  H+SP + S P  V+   GIP
Sbjct: 433 HVEHRQCHDTRHSSPLQPSIP--VIDLTGIP 461


>SB_48221| Best HMM Match : Caudal_act (HMM E-Value=5)
          Length = 317

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -1

Query: 309 HSCHYQCHD*EHNSPCRYSTPRLVVLCEGIP 217
           H  H QCHD  H+SP + S P  V+   GIP
Sbjct: 147 HVEHRQCHDTRHSSPLQPSIP--VIDLTGIP 175


>SB_3703| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 930

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -1

Query: 309 HSCHYQCHD*EHNSPCRYSTPRLVVLCEGIP 217
           H  H QCHD  H+SP + S P  V+   GIP
Sbjct: 828 HVEHRQCHDTRHSSPLQPSIP--VIDLTGIP 856


>SB_19903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 560

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +1

Query: 175 PGSREG*TVRRHFPGYTFTEHH 240
           P    G  V R +PGY  TEHH
Sbjct: 402 PEGHHGSKVTRKYPGYQLTEHH 423


>SB_28990| Best HMM Match : YABBY (HMM E-Value=0.45)
          Length = 853

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 232 EHHKAWCGISAWGIVFLVVALVVAGMGFYYFSMCYPYFC 348
           + HKA   +    I+FL V L + G G +  +   P FC
Sbjct: 278 QRHKATVPLLIINIIFLPVLLGIVGAGVFLSAPLLPLFC 316


>SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1831

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 204  EALPRVYLHRAPQGVVWNICMGNC 275
            +A  R +LHR P G+ W++    C
Sbjct: 1014 DAFHRAFLHRCPAGLKWSVKKTTC 1037


>SB_25230| Best HMM Match : NACHT (HMM E-Value=0.0015)
          Length = 1238

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +2

Query: 107 NHTAGCDALRSSNRGNSKYGSGNQGLGKAKPYGGTSPGIPSQS 235
           +H  GC   RS   GN+     NQG G+ +PY   S   P+ +
Sbjct: 95  SHLMGCGTSRSPVAGNTLPHPSNQG-GQTEPYSKHSNLTPASN 136


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,550,426
Number of Sequences: 59808
Number of extensions: 415624
Number of successful extensions: 1052
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)