Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00601
         (615 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53153-1|AAC69039.4|  715|Caenorhabditis elegans Hypothetical pr...    31   0.65 
Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical pr...    28   4.6  
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l...    28   4.6  
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p...    28   4.6  
Z79752-4|CAB02083.1| 1188|Caenorhabditis elegans Hypothetical pr...    28   6.1  
AL021497-3|CAA16405.1|  613|Caenorhabditis elegans Hypothetical ...    28   6.1  

>U53153-1|AAC69039.4|  715|Caenorhabditis elegans Hypothetical
           protein T19A5.3a protein.
          Length = 715

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 149 GNSKYGSGNQGLGKAKPYGGTSPGIPS 229
           G   +G G  G G   P+GG +P  PS
Sbjct: 492 GGGGFGGGGGGFGSGSPFGGAAPSPPS 518


>Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical
           protein F36H2.3 protein.
          Length = 1388

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +3

Query: 249 VWNICMGNCVLSRGTG 296
           VWN  +GNCV S GTG
Sbjct: 541 VWNPTIGNCVSSGGTG 556


>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
            lineage protein 13 protein.
          Length = 2248

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 125  DALRSSNRGNSKYGSGNQGLGKAKP 199
            +AL  S  GN+K+GS N   G+A+P
Sbjct: 1819 NALSMSQFGNAKHGSANHSHGQAQP 1843


>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
            protein LIN-13 protein.
          Length = 2248

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 125  DALRSSNRGNSKYGSGNQGLGKAKP 199
            +AL  S  GN+K+GS N   G+A+P
Sbjct: 1819 NALSMSQFGNAKHGSANHSHGQAQP 1843


>Z79752-4|CAB02083.1| 1188|Caenorhabditis elegans Hypothetical
           protein D2005.4 protein.
          Length = 1188

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +3

Query: 489 HITNNILSLYV*DIEPILTVLNIKNVFD*ICIGITNAYG 605
           H   NILS++  +I+P+L +  IK +F+ I    T + G
Sbjct: 271 HDRRNILSVWGHEIDPLLELKTIKAIFEEIKDSFTKSEG 309


>AL021497-3|CAA16405.1|  613|Caenorhabditis elegans Hypothetical
           protein Y51A2D.5 protein.
          Length = 613

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = +1

Query: 250 CGISAWGIVFLVVALVVAGMGFYYFSMCYPYFCHRQEKYHIMGT 381
           C + AW  + +++  +  G+G  + SM  P +       H+ GT
Sbjct: 113 CAV-AWTKIVMLIGRIFLGVGIGFASMVVPVYLGEASPTHVRGT 155


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,447,640
Number of Sequences: 27780
Number of extensions: 307198
Number of successful extensions: 802
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)