Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00601
         (615 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g25180.1 68415.m03011 two-component responsive regulator fami...    30   1.1  
At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) famil...    29   2.4  
At2g02450.2 68415.m00185 no apical meristem (NAM) family protein...    28   5.7  
At2g02450.1 68415.m00184 no apical meristem (NAM) family protein...    28   5.7  
At5g13150.1 68418.m01506 exocyst subunit EXO70 family protein le...    27   7.5  
At4g34430.4 68417.m04893 DNA-binding family protein contains Pfa...    27   7.5  
At4g34430.3 68417.m04892 DNA-binding family protein contains Pfa...    27   7.5  
At4g34430.2 68417.m04891 DNA-binding family protein contains Pfa...    27   7.5  
At4g34430.1 68417.m04890 DNA-binding family protein contains Pfa...    27   7.5  
At5g02410.1 68418.m00164 DIE2/ALG10 family contains Pfam PF04922...    27   9.9  
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein...    27   9.9  

>At2g25180.1 68415.m03011 two-component responsive regulator family
           protein / response regulator family protein contains
           Pfam profile: PF00072 response regulator receiver domain
          Length = 596

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 137 SSNRGNSKYGSGNQGLGKAKPYGG 208
           S+N G+ + GSGN+G+G + P  G
Sbjct: 143 SNNNGDKRDGSGNEGVGNSDPNNG 166


>At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) family
           protein / RNA recognition motif (RRM)-containing protein
           
          Length = 458

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +2

Query: 143 NRGNSKYGSGNQGLGKAKPYGGTSPGIPSQSTTRRGVEYL 262
           N G    G G+ G G     GG  PG   +S  RRG EY+
Sbjct: 413 NVGVGMRGRGSYGYGYDYRRGGRGPGGGGRSFNRRGNEYV 452


>At2g02450.2 68415.m00185 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain
          Length = 414

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 308 IPATTSATTKNTIPHADIPHHALW 237
           +P T +A   N IP   IP++ALW
Sbjct: 370 MPQTQAALAMNMIPAGTIPNNALW 393


>At2g02450.1 68415.m00184 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain
          Length = 379

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 308 IPATTSATTKNTIPHADIPHHALW 237
           +P T +A   N IP   IP++ALW
Sbjct: 335 MPQTQAALAMNMIPAGTIPNNALW 358


>At5g13150.1 68418.m01506 exocyst subunit EXO70 family protein
           leucine zipper-containing protein - Lycopersicon
           esculentum, EMBL:Z12127 contains Pfam domain PF03081:
           Exo70 exocyst complex subunit;
          Length = 653

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 218 GIPSQSTTRRGVEYLHGELCS*SWHW*WQEWVSIISQCATLIF 346
           GI  +   R G E L GE+ S         W+SI+ +C+T++F
Sbjct: 254 GINVEDVQRIGWESLEGEIAS---------WISIVRRCSTVLF 287


>At4g34430.4 68417.m04893 DNA-binding family protein contains Pfam
           domains PF04433: SWIRM domain, PF00249: Myb-like
           DNA-binding domain and PF00569: Zinc finger, ZZ type
          Length = 986

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -1

Query: 207 PPYGLAFPRPWFPLP 163
           PP G+AFPRP  P P
Sbjct: 941 PPMGMAFPRPPMPRP 955


>At4g34430.3 68417.m04892 DNA-binding family protein contains Pfam
           domains PF04433: SWIRM domain, PF00249: Myb-like
           DNA-binding domain and PF00569: Zinc finger, ZZ type
          Length = 983

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -1

Query: 207 PPYGLAFPRPWFPLP 163
           PP G+AFPRP  P P
Sbjct: 938 PPMGMAFPRPPMPRP 952


>At4g34430.2 68417.m04891 DNA-binding family protein contains Pfam
           domains PF04433: SWIRM domain, PF00249: Myb-like
           DNA-binding domain and PF00569: Zinc finger, ZZ type
          Length = 985

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -1

Query: 207 PPYGLAFPRPWFPLP 163
           PP G+AFPRP  P P
Sbjct: 940 PPMGMAFPRPPMPRP 954


>At4g34430.1 68417.m04890 DNA-binding family protein contains Pfam
           domains PF04433: SWIRM domain, PF00249: Myb-like
           DNA-binding domain and PF00569: Zinc finger, ZZ type
          Length = 985

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -1

Query: 207 PPYGLAFPRPWFPLP 163
           PP G+AFPRP  P P
Sbjct: 940 PPMGMAFPRPPMPRP 954


>At5g02410.1 68418.m00164 DIE2/ALG10 family contains Pfam PF04922:
           DIE2/ALG10 family
          Length = 509

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 12/49 (24%), Positives = 24/49 (48%)
 Frame = +1

Query: 220 YTFTEHHKAWCGISAWGIVFLVVALVVAGMGFYYFSMCYPYFCHRQEKY 366
           + F + H+ W    +  ++  +VALV   +  ++FS+ +PY       Y
Sbjct: 343 HQFHQLHRNW----SLSLILTLVALVAGFVSVHFFSLAHPYLLADNRHY 387


>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
           putative / hnRNP, putative 
          Length = 404

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +2

Query: 134 RSSNRGNSKYGSGNQGLGKAKPYGGT-SPG 220
           RSS    +  G GN G G A P+GG+  PG
Sbjct: 288 RSSWGAQAPSGYGNVGYGNAAPWGGSGGPG 317


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,417,897
Number of Sequences: 28952
Number of extensions: 280534
Number of successful extensions: 667
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)