Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00599
         (739 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   320   6e-90
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   317   8e-89
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...   202   3e-54
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...   172   3e-45
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    33   0.003
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   1.3  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   3.0  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   4.0  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   6.9  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    22   6.9  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  320 bits (787), Expect = 6e-90
 Identities = 153/155 (98%), Positives = 153/155 (98%)
 Frame = +3

Query: 45  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 224
           MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60

Query: 225 DKLKAERERRITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 404
           DKLKAERER ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT
Sbjct: 61  DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 120

Query: 405 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKM 509
           GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKM
Sbjct: 121 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKM 155



 Score =  101 bits (243), Expect = 5e-24
 Identities = 53/78 (67%), Positives = 56/78 (71%), Gaps = 1/78 (1%)
 Frame = +2

Query: 509 DSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPFLDGTETTCWSLQPKCLGSRD-A 685
           DSTEPPYSE RFEEIKKEVSSYIKKIGYNPAAVAFVP           +  K    +   
Sbjct: 156 DSTEPPYSETRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEVSSKMPWFKGWT 215

Query: 686 VERKEGKADGKCLIEALD 739
           VERKEGK +GKCLIEALD
Sbjct: 216 VERKEGKVEGKCLIEALD 233


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  317 bits (778), Expect = 8e-89
 Identities = 151/155 (97%), Positives = 152/155 (98%)
 Frame = +3

Query: 45  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 224
           MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60

Query: 225 DKLKAERERRITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 404
           DKLKAERER ITIDIALWKFET+KYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 
Sbjct: 61  DKLKAERERGITIDIALWKFETAKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGI 120

Query: 405 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKM 509
           GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKM
Sbjct: 121 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKM 155



 Score = 91.5 bits (217), Expect = 8e-21
 Identities = 49/78 (62%), Positives = 53/78 (67%), Gaps = 1/78 (1%)
 Frame = +2

Query: 509 DSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPFLDGTETTCWSLQPKCLGSRD-A 685
           D T+PPYSE RFEEIKKEVSSYIKKIGYN A+VAFVP             PK    +   
Sbjct: 156 DMTDPPYSEARFEEIKKEVSSYIKKIGYNTASVAFVPISGWHGDNMLEPSPKTPWYKGWK 215

Query: 686 VERKEGKADGKCLIEALD 739
           VERK+G ADGK LIEALD
Sbjct: 216 VERKDGNADGKTLIEALD 233


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score =  202 bits (493), Expect = 3e-54
 Identities = 97/98 (98%), Positives = 97/98 (98%)
 Frame = +3

Query: 216 WVLDKLKAERERRITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 395
           WVLDKLKAERER ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA
Sbjct: 1   WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 60

Query: 396 AGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKM 509
           AGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKM
Sbjct: 61  AGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKM 98



 Score =  101 bits (243), Expect = 5e-24
 Identities = 53/78 (67%), Positives = 56/78 (71%), Gaps = 1/78 (1%)
 Frame = +2

Query: 509 DSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPFLDGTETTCWSLQPKCLGSRD-A 685
           DSTEPPYSE RFEEIKKEVSSYIKKIGYNPAAVAFVP           +  K    +   
Sbjct: 99  DSTEPPYSETRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEVSSKMPWFKGWT 158

Query: 686 VERKEGKADGKCLIEALD 739
           VERKEGK +GKCLIEALD
Sbjct: 159 VERKEGKVEGKCLIEALD 176


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score =  172 bits (419), Expect = 3e-45
 Identities = 82/82 (100%), Positives = 82/82 (100%)
 Frame = +3

Query: 264 DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 443
           DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT
Sbjct: 1   DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 60

Query: 444 REHALLAFTLGVKQLIVGVNKM 509
           REHALLAFTLGVKQLIVGVNKM
Sbjct: 61  REHALLAFTLGVKQLIVGVNKM 82



 Score =  101 bits (243), Expect = 5e-24
 Identities = 53/78 (67%), Positives = 56/78 (71%), Gaps = 1/78 (1%)
 Frame = +2

Query: 509 DSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPFLDGTETTCWSLQPKCLGSRD-A 685
           DSTEPPYSE RFEEIKKEVSSYIKKIGYNPAAVAFVP           +  K    +   
Sbjct: 83  DSTEPPYSETRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEVSSKMPWFKGWT 142

Query: 686 VERKEGKADGKCLIEALD 739
           VERKEGK +GKCLIEALD
Sbjct: 143 VERKEGKVEGKCLIEALD 160


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 33.1 bits (72), Expect = 0.003
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = +3

Query: 303 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 407
           VT +D PGH  FI     G    D  VL+VAA  G
Sbjct: 195 VTFLDTPGHAAFISMRHRGAHITDIVVLVVAADDG 229



 Score = 25.4 bits (53), Expect = 0.56
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 57  KTHINIVVIGHVDSGKST 110
           K H  + ++GHVD GK+T
Sbjct: 143 KRHPIVTIMGHVDHGKTT 160


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = +3

Query: 66  INIVVIGHVDSGKST 110
           INI  IGHV  GKST
Sbjct: 43  INIGTIGHVAHGKST 57


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 288 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 389
           T KYY    D P +  FIKN+   ++ +D   LI
Sbjct: 294 TMKYYDYGADFPFNFAFIKNVSRDSNSSDFKKLI 327


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 288 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 389
           T KYY    D P +  FIKN+   ++ +D   L+
Sbjct: 294 TMKYYDYGADFPFNFAFIKNVSRDSNSSDFKKLV 327


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 7/28 (25%), Positives = 15/28 (53%)
 Frame = -1

Query: 655 KAPTCCLRAIQKWHESDSSWVVANLLDV 572
           + P   +  I+ W     +W++ N+LD+
Sbjct: 490 RQPEPLIELIEHWMPLLPNWILENILDM 517



 Score = 21.8 bits (44), Expect = 6.9
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 482 TAHRRSKQNDSTEPPYSEPRFEEIKKEV 565
           T+  R++   S  PP ++PR E + + V
Sbjct: 725 TSLERTQPTMSQMPPTAQPRMERLAEAV 752


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 58  FSLPIFG*SRITNCV 14
           FSLPIFG   I +C+
Sbjct: 57  FSLPIFGTRWIFSCI 71


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,579
Number of Sequences: 438
Number of extensions: 4276
Number of successful extensions: 30
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)