Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00598
(406 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00033-6|AAC48295.2| 104|Caenorhabditis elegans Ribosomal prote... 66 9e-12
Z81589-9|CAJ85769.1| 926|Caenorhabditis elegans Hypothetical pr... 30 0.73
Z81589-8|CAB04720.1| 923|Caenorhabditis elegans Hypothetical pr... 30 0.73
AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical... 29 1.3
AC006651-7|AAX22287.1| 786|Caenorhabditis elegans Hypothetical ... 28 2.2
AC006651-6|AAF39868.1| 833|Caenorhabditis elegans Hypothetical ... 28 2.2
Z70680-8|CAA94570.2| 349|Caenorhabditis elegans Hypothetical pr... 27 5.1
AF100662-2|AAC68976.1| 478|Caenorhabditis elegans Hypothetical ... 27 5.1
AF125959-1|AAD14733.1| 475|Caenorhabditis elegans Hypothetical ... 27 6.8
X03044-1|CAA26849.1| 1603|Caenorhabditis elegans put. vitellogen... 26 9.0
U42835-3|AAA83587.1| 1603|Caenorhabditis elegans Vitellogenin st... 26 9.0
>U00033-6|AAC48295.2| 104|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 36 protein.
Length = 104
Score = 66.1 bits (154), Expect = 9e-12
Identities = 34/74 (45%), Positives = 49/74 (66%)
Frame = +1
Query: 34 IAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKR 213
+AVGL KGH T++ ++ R R KG+ +K +K VR+LVRE+ G A YE+R
Sbjct: 9 LAVGLNKGHAATQLP----------VKQRQNRHKGVASKKTKIVRELVREITGFAPYERR 58
Query: 214 AMELLKVSKDKRAL 255
+E+L++SKDKRAL
Sbjct: 59 VLEMLRISKDKRAL 72
Score = 46.4 bits (105), Expect = 8e-06
Identities = 22/35 (62%), Positives = 25/35 (71%)
Frame = +3
Query: 237 KRQACSKFLKRRLGTHIRAKRKREELSNVLAQMRK 341
K + KFLKRR+GTH RAK KREEL NV+ RK
Sbjct: 67 KDKRALKFLKRRIGTHRRAKGKREELQNVIIAQRK 101
>Z81589-9|CAJ85769.1| 926|Caenorhabditis elegans Hypothetical
protein T08G5.5b protein.
Length = 926
Score = 29.9 bits (64), Expect = 0.73
Identities = 15/47 (31%), Positives = 29/47 (61%)
Frame = +1
Query: 118 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALS 258
R LK L+ HS + ++ ++ HA YE+RA+ L ++ + ++AL+
Sbjct: 679 RKRLLKFLEVSHSYSPQTVLLQLAPHAFYEERALILGRLKQHEQALA 725
>Z81589-8|CAB04720.1| 923|Caenorhabditis elegans Hypothetical
protein T08G5.5a protein.
Length = 923
Score = 29.9 bits (64), Expect = 0.73
Identities = 15/47 (31%), Positives = 29/47 (61%)
Frame = +1
Query: 118 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALS 258
R LK L+ HS + ++ ++ HA YE+RA+ L ++ + ++AL+
Sbjct: 676 RKRLLKFLEVSHSYSPQTVLLQLAPHAFYEERALILGRLKQHEQALA 722
>AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical
protein Y47D3A.26 protein.
Length = 1205
Score = 29.1 bits (62), Expect = 1.3
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +1
Query: 115 IRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKR 249
++ ++ L T + L+REV G Y++R E LK+ K+ +
Sbjct: 140 VKQGKINELATSPDAYKLKLLREVAGTRVYDERKEESLKILKETK 184
>AC006651-7|AAX22287.1| 786|Caenorhabditis elegans Hypothetical
protein H06I04.3c protein.
Length = 786
Score = 28.3 bits (60), Expect = 2.2
Identities = 12/40 (30%), Positives = 26/40 (65%)
Frame = +1
Query: 130 LKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKR 249
L+ Q +HS+ VR++ + + EK+ +EL++++K K+
Sbjct: 732 LENDQMEHSEKVREMKKVYANATRKEKKKVELVRMTKGKK 771
>AC006651-6|AAF39868.1| 833|Caenorhabditis elegans Hypothetical
protein H06I04.3a protein.
Length = 833
Score = 28.3 bits (60), Expect = 2.2
Identities = 12/40 (30%), Positives = 26/40 (65%)
Frame = +1
Query: 130 LKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKR 249
L+ Q +HS+ VR++ + + EK+ +EL++++K K+
Sbjct: 732 LENDQMEHSEKVREMKKVYANATRKEKKKVELVRMTKGKK 771
>Z70680-8|CAA94570.2| 349|Caenorhabditis elegans Hypothetical
protein C25G4.7 protein.
Length = 349
Score = 27.1 bits (57), Expect = 5.1
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +1
Query: 163 VRDLVREVVGHAQYEKRAMELLKV 234
+RD + EV+G+ Q++K +E+L V
Sbjct: 133 IRDFLCEVIGNRQFKKYKLEILTV 156
>AF100662-2|AAC68976.1| 478|Caenorhabditis elegans Hypothetical
protein H34C03.1 protein.
Length = 478
Score = 27.1 bits (57), Expect = 5.1
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = -1
Query: 301 FLLARMCVPNRRFKNLEHACLLTP*VTP*PSSHIE-RVRQLRVLNHGQTWSVSFEDPL 131
F MC+P R ++ AC LT S IE + + LN+G TW + D +
Sbjct: 101 FFSISMCMPRHRHPSILRACRLT-------VSAIECLTEETKSLNNGTTWQDLYTDEI 151
>AF125959-1|AAD14733.1| 475|Caenorhabditis elegans Hypothetical
protein H23N18.4 protein.
Length = 475
Score = 26.6 bits (56), Expect = 6.8
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = +1
Query: 172 LVREVVGHAQYEKRAMELLKV 234
+V+++V + +YEK A ELL+V
Sbjct: 434 IVKDMVSNPKYEKNAQELLRV 454
>X03044-1|CAA26849.1| 1603|Caenorhabditis elegans put. vitellogenin
protein.
Length = 1603
Score = 26.2 bits (55), Expect = 9.0
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Frame = +1
Query: 10 EIMAPRFEIAVGLRK----GHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLV 177
E++A R ++ LR+ H+ +++ K + K I T+ KF+R++
Sbjct: 1128 ELLAARPQMPSSLRQLREQPHREVQLAFNAKWGSSKKSEITVNAQLEQSTEQKKFIRNIE 1187
Query: 178 REVVGHAQYE 207
RE G +YE
Sbjct: 1188 REYKGIPEYE 1197
>U42835-3|AAA83587.1| 1603|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 5 protein.
Length = 1603
Score = 26.2 bits (55), Expect = 9.0
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Frame = +1
Query: 10 EIMAPRFEIAVGLRK----GHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLV 177
E++A R ++ LR+ H+ +++ K + K I T+ KF+R++
Sbjct: 1128 ELLAARPQMPSSLRQLREQPHREVQLAFNAKWGSSKKSEITVNAQLEQSTEQKKFIRNIE 1187
Query: 178 REVVGHAQYE 207
RE G +YE
Sbjct: 1188 REYKGIPEYE 1197
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,245,551
Number of Sequences: 27780
Number of extensions: 148477
Number of successful extensions: 348
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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