Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00598
(406 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g53740.2 68416.m05937 60S ribosomal protein L36 (RPL36B) 60S ... 61 3e-10
At2g37600.1 68415.m04613 60S ribosomal protein L36 (RPL36A) 60 6e-10
At5g02450.1 68418.m00171 60S ribosomal protein L36 (RPL36C) 60S ... 60 7e-10
At3g53740.1 68416.m05936 60S ribosomal protein L36 (RPL36B) 60S ... 53 8e-08
At1g34590.1 68414.m04299 hypothetical protein 29 1.6
At2g47115.1 68415.m05884 expressed protein 28 2.7
At5g60070.1 68418.m07532 ankyrin repeat family protein contains ... 27 3.6
At5g05440.1 68418.m00586 expressed protein low similarity to cyt... 27 3.6
At1g61030.1 68414.m06871 expressed protein 27 6.3
At5g28430.1 68418.m03453 hypothetical protein 26 8.3
At4g06603.1 68417.m01028 expressed protein 26 8.3
At3g60930.1 68416.m06816 expressed protein 26 8.3
>At3g53740.2 68416.m05937 60S ribosomal protein L36 (RPL36B) 60S
RIBOSOMAL PROTEIN L36 - Schizosaccharomyces pombe,
swissprot:Q92365
Length = 112
Score = 60.9 bits (141), Expect = 3e-10
Identities = 34/72 (47%), Positives = 43/72 (59%)
Frame = +1
Query: 40 VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 219
VGL KGH T+ + + RP KG +K + F+R+L++EV G A YEKR
Sbjct: 12 VGLNKGHVVTR----------RELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRIT 61
Query: 220 ELLKVSKDKRAL 255
ELLKV KDKRAL
Sbjct: 62 ELLKVGKDKRAL 73
Score = 44.4 bits (100), Expect = 3e-05
Identities = 21/34 (61%), Positives = 26/34 (76%)
Frame = +3
Query: 237 KRQACSKFLKRRLGTHIRAKRKREELSNVLAQMR 338
K + K KR+LGTH RAKRKREE+S+VL +MR
Sbjct: 68 KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMR 101
>At2g37600.1 68415.m04613 60S ribosomal protein L36 (RPL36A)
Length = 113
Score = 60.1 bits (139), Expect = 6e-10
Identities = 35/72 (48%), Positives = 42/72 (58%)
Frame = +1
Query: 40 VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 219
VGL KGH T+ + + RP KG +K + F+R L+REV G A YEKR
Sbjct: 12 VGLNKGHVVTR----------RELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRIT 61
Query: 220 ELLKVSKDKRAL 255
ELLKV KDKRAL
Sbjct: 62 ELLKVGKDKRAL 73
Score = 44.4 bits (100), Expect = 3e-05
Identities = 21/34 (61%), Positives = 26/34 (76%)
Frame = +3
Query: 237 KRQACSKFLKRRLGTHIRAKRKREELSNVLAQMR 338
K + K KR+LGTH RAKRKREE+S+VL +MR
Sbjct: 68 KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMR 101
>At5g02450.1 68418.m00171 60S ribosomal protein L36 (RPL36C) 60S
ribosomal protein L36, Arabidopsis thaliana,
EMBL:AC004684
Length = 108
Score = 59.7 bits (138), Expect = 7e-10
Identities = 35/72 (48%), Positives = 42/72 (58%)
Frame = +1
Query: 40 VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 219
VGL KGH TK + RP KG +K + F+R+L++EV G A YEKR
Sbjct: 8 VGLNKGHVVTK----------REQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRIT 57
Query: 220 ELLKVSKDKRAL 255
ELLKV KDKRAL
Sbjct: 58 ELLKVGKDKRAL 69
Score = 44.4 bits (100), Expect = 3e-05
Identities = 21/34 (61%), Positives = 26/34 (76%)
Frame = +3
Query: 237 KRQACSKFLKRRLGTHIRAKRKREELSNVLAQMR 338
K + K KR+LGTH RAKRKREE+S+VL +MR
Sbjct: 64 KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMR 97
>At3g53740.1 68416.m05936 60S ribosomal protein L36 (RPL36B) 60S
RIBOSOMAL PROTEIN L36 - Schizosaccharomyces pombe,
swissprot:Q92365
Length = 103
Score = 52.8 bits (121), Expect = 8e-08
Identities = 30/69 (43%), Positives = 40/69 (57%)
Frame = +1
Query: 40 VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 219
VGL KGH T+ + + RP KG +K + F+R+L++EV G A YEKR
Sbjct: 12 VGLNKGHVVTR----------RELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRIT 61
Query: 220 ELLKVSKDK 246
ELLKV+K K
Sbjct: 62 ELLKVAKRK 70
Score = 44.0 bits (99), Expect = 4e-05
Identities = 20/28 (71%), Positives = 24/28 (85%)
Frame = +3
Query: 255 KFLKRRLGTHIRAKRKREELSNVLAQMR 338
K KR+LGTH RAKRKREE+S+VL +MR
Sbjct: 65 KVAKRKLGTHKRAKRKREEMSSVLRKMR 92
>At1g34590.1 68414.m04299 hypothetical protein
Length = 820
Score = 28.7 bits (61), Expect = 1.6
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +1
Query: 7 EEIMAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPAR 129
+++ AP E A GH++ + A + G+TD+A + PA+
Sbjct: 771 DDLKAPALESAPLSPGGHRSVESVADKAGVTDQAGSLLPAK 811
>At2g47115.1 68415.m05884 expressed protein
Length = 300
Score = 27.9 bits (59), Expect = 2.7
Identities = 19/47 (40%), Positives = 22/47 (46%)
Frame = -3
Query: 383 IYHLMVMVMSLGGCLPHLSEHVAKFFTLPLGADVCAQSSLQELRARL 243
IY M +V S+ GCL HL E TL DV + E R RL
Sbjct: 112 IYFAMGIVASVYGCLIHLKE-----LTLETDEDVVVEKVGDEFRRRL 153
>At5g60070.1 68418.m07532 ankyrin repeat family protein contains
ankyrin repeat domains, Pfam:PF00023
Length = 548
Score = 27.5 bits (58), Expect = 3.6
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +1
Query: 4 HEEIMAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLK 135
H + ++ V L KGH+++ A KG T + R R+K
Sbjct: 216 HMAVKGQSIDVVVELMKGHRSSLNMADSKGNTALHVATRKGRIK 259
>At5g05440.1 68418.m00586 expressed protein low similarity to
cytokinin-specific binding protein [Vigna radiata]
GI:4190976
Length = 203
Score = 27.5 bits (58), Expect = 3.6
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 335 HLSEHVAKFFTLPLGADVCAQSSLQELRA 249
H+ EHVA T +G D C S +Q + A
Sbjct: 40 HVPEHVAMHHTHDVGPDQCCSSVVQMIHA 68
>At1g61030.1 68414.m06871 expressed protein
Length = 840
Score = 26.6 bits (56), Expect = 6.3
Identities = 16/61 (26%), Positives = 30/61 (49%)
Frame = -3
Query: 338 PHLSEHVAKFFTLPLGADVCAQSSLQELRARLSFDTLSNSIALFSY*ACPTTSRTKSRTN 159
PHL+ V K F + +D C+ + +++ LS + S L C TT + S+++
Sbjct: 412 PHLASAVKKGFVTIISSDTCSTTGFSSIKS-LSVSKRNQSAFLV---GCSTTPKPGSQSS 467
Query: 158 L 156
+
Sbjct: 468 V 468
>At5g28430.1 68418.m03453 hypothetical protein
Length = 486
Score = 26.2 bits (55), Expect = 8.3
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +1
Query: 7 EEIMAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPAR 129
+++ AP E A GH++ + A GITD+A + PA+
Sbjct: 437 DDLKAPAPEPAPLSPGGHRSVESLADEAGITDQAGSLLPAK 477
>At4g06603.1 68417.m01028 expressed protein
Length = 786
Score = 26.2 bits (55), Expect = 8.3
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +1
Query: 7 EEIMAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPAR 129
+++ AP E A GH++ + A GITD+A + PA+
Sbjct: 737 DDLKAPAPEPAPLSPGGHRSVESLADEAGITDQAGSLLPAK 777
>At3g60930.1 68416.m06816 expressed protein
Length = 798
Score = 26.2 bits (55), Expect = 8.3
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +1
Query: 7 EEIMAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPAR 129
+++ AP E A GH++ + A GITD+A + PA+
Sbjct: 749 DDLKAPAPEPAPLSPGGHRSVESLADEAGITDQAGSLLPAK 789
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,897,212
Number of Sequences: 28952
Number of extensions: 142637
Number of successful extensions: 357
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 356
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 595686720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -