Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00597
(751 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 33 0.043
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 33 0.043
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 29 0.71
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom... 29 0.94
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 28 1.2
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha... 28 1.2
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 28 1.2
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c... 28 1.6
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch... 27 2.2
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 27 2.2
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa... 27 2.2
SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex sub... 27 2.2
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch... 27 2.9
SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyce... 27 2.9
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 27 3.8
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 26 5.0
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|... 26 5.0
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch... 26 5.0
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 26 5.0
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 26 5.0
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 26 6.6
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 26 6.6
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 8.7
SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces... 25 8.7
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 25 8.7
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 25 8.7
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 25 8.7
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 25 8.7
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 25 8.7
SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom... 25 8.7
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 33.1 bits (72), Expect = 0.043
Identities = 25/94 (26%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Frame = +2
Query: 236 LAGTRSHRQEELNDLLAKLDELQAQAKNDVELTKATLTAANEIYKTLKEFSDQ-----VT 400
LAG + + ELN+ + ++ ++ +D ++K T I + +E Q +
Sbjct: 233 LAGL-AQQNTELNEKIQLFEQKRSNYSSDGNISKILETDPTSIKELEEEVETQKRLTALW 291
Query: 401 ESHKQAIQATMDVPAVQEKVAAAEESINSITEEL 502
ES +Q+ +V A+QEK+ + + N++TEEL
Sbjct: 292 ESKSSELQS--EVAALQEKLTSQQSLYNNVTEEL 323
Score = 25.4 bits (53), Expect = 8.7
Identities = 8/29 (27%), Positives = 17/29 (58%)
Frame = +3
Query: 90 PDIKLNKLHEDSMEMNRTIDEKSAELDRL 176
P+ K++ D+M++ + + +LDRL
Sbjct: 382 PEFSFTKVYSDNMKLQQKVSSLKLQLDRL 410
>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 345
Score = 33.1 bits (72), Expect = 0.043
Identities = 23/84 (27%), Positives = 39/84 (46%)
Frame = +2
Query: 248 RSHRQEELNDLLAKLDELQAQAKNDVELTKATLTAANEIYKTLKEFSDQVTESHKQAIQA 427
R + N+LL D L+ Q + + AA E K +EF Q+T+ ++ Q
Sbjct: 99 RKELESAKNNLLNVYDSLKMQKASVSSMVNRKQRAAKEEQKIQEEFERQITDLLEEQQQL 158
Query: 428 TMDVPAVQEKVAAAEESINSITEE 499
+++ E++ A E NS TE+
Sbjct: 159 KLEI----ERLEAETERANSETEQ 178
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 29.1 bits (62), Expect = 0.71
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 105 NKLHEDSMEMNRTIDEKSAELDRLIAENEDTLHNLE 212
N L E + + +D E+D+LI E E+ L+N+E
Sbjct: 248 NGLMESRSQSLKILDSNVNEMDKLIMERENALNNVE 283
>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 597
Score = 28.7 bits (61), Expect = 0.94
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Frame = +3
Query: 117 EDSMEMNRTIDEKSAELDRLIAENEDTLHNLEEGIRRGRDLLEQGHTGRRNST--ISSLS 290
+D ++ ++D+KS +L EN D +L R +L+E G +R T I+
Sbjct: 478 QDDLDYYESLDKKSKMAKKLRKENHDLERDLIRASRH-PELIELGEGDKRGITLDIAKNR 536
Query: 291 WMSCRRKLKTMWNSRKPR*QPQMRFTRL*KSSVIK 395
++ RR + +R PR + +MR+ + K K
Sbjct: 537 GLTPRRPKE----NRNPRLKKRMRYEKAKKKLASK 567
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 28.3 bits (60), Expect = 1.2
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 255 TGRRNSTISSLSWMSCRRKLKTMWNSRKPR*QP 353
TG T +W+ RRK+K+M S++P +P
Sbjct: 1220 TGSAFFTAEQRAWLELRRKIKSMRPSKRPAIRP 1252
>SPAC139.05 |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 493
Score = 28.3 bits (60), Expect = 1.2
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 323 VELTKATLTAANEIYKTLKEFS 388
VE TK ++AANE +KT K F+
Sbjct: 54 VEETKKAISAANEAFKTYKNFT 75
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 28.3 bits (60), Expect = 1.2
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Frame = +2
Query: 254 HRQEELNDLLAKLDELQAQAKNDVELTKATLTA------ANEIYKTLKEFSD 391
HR++ L L++L+ + +DV+LT+A A AN+++ TL SD
Sbjct: 898 HREKTQEGLNKVLEDLETKKASDVQLTEAEKAAERRANLANKMFDTLANASD 949
>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 767
Score = 27.9 bits (59), Expect = 1.6
Identities = 14/64 (21%), Positives = 31/64 (48%)
Frame = +2
Query: 323 VELTKATLTAANEIYKTLKEFSDQVTESHKQAIQATMDVPAVQEKVAAAEESINSITEEL 502
+E L +EI L+ S T K ++D+P+++ K+A ES+ + +++
Sbjct: 145 IETPPRLLMNKDEISLNLQRLSHMETILSKLMPSMSLDLPSLEAKIAELSESLQTYPDKV 204
Query: 503 VAPV 514
+ +
Sbjct: 205 LTDI 208
>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 161
Score = 27.5 bits (58), Expect = 2.2
Identities = 21/82 (25%), Positives = 40/82 (48%)
Frame = +3
Query: 3 ARADQALKRARAVYDEALGLYAEVNTTLLPDIKLNKLHEDSMEMNRTIDEKSAELDRLIA 182
A D+A+ RA A + + +++ L++ E + ++E++ +L RL A
Sbjct: 13 AETDEAVARAEAAEAKLKEVELQLSLKEQEYESLSRKSEAAESQLEELEEETKQL-RLKA 71
Query: 183 ENEDTLHNLEEGIRRGRDLLEQ 248
+NED E + R +LLE+
Sbjct: 72 DNEDIQKTEAEQLSRKVELLEE 93
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 27.5 bits (58), Expect = 2.2
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +2
Query: 362 IYKTLKEFSDQVTESHKQA 418
+ KTL FSDQV E HK A
Sbjct: 122 LQKTLSAFSDQVIEFHKNA 140
>SPAC3C7.06c |pit1||serine/threonine protein kinase
Pit1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 650
Score = 27.5 bits (58), Expect = 2.2
Identities = 23/109 (21%), Positives = 41/109 (37%), Gaps = 3/109 (2%)
Frame = +2
Query: 302 QAQAKNDVELTKATLTAANEIYKTLKEFSDQVTESHKQAIQATMDVPAVQEKVAAAEESI 481
+ + + + +T ++ K F+ +S KQ+ + +E+
Sbjct: 373 ECNTEEESRINPSTSKFLKQLNKGFNGFTKPFRKSRKQSKNRKNKSSVATQFSEESEDIA 432
Query: 482 NSITEELVAPVTRRRRPGTWPSKRKRNMPTKLLRPPTKSRRK---RPLP 619
+SIT PV + RP T + + RN T + K RPLP
Sbjct: 433 DSITSSTFFPVLPQIRPSTPLNLKLRNFIISSSEDSTSPKAKEFDRPLP 481
>SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex
subunit Php4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 295
Score = 27.5 bits (58), Expect = 2.2
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 260 QEELNDLLAKLDELQAQAKNDVELTKATLTAANEIYK 370
Q+E N+LL +L+ LQAQ KN + + +E+ K
Sbjct: 87 QKENNELLEQLEMLQAQLKNSTLDSPKEVEVNSEVVK 123
>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1030
Score = 27.1 bits (57), Expect = 2.9
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 8/52 (15%)
Frame = -1
Query: 394 LITELF*SLVNLICGCQRGFREFHIVFSLRLQ--------LIQLSEEIVEFL 263
L+TE+F S +N + RG R+F + SL L+ L+ + +E+VE L
Sbjct: 403 LVTEIFDSAINQLSEEDRGLRQFEEMRSLLLRGIGIHHSGLLPILKELVEIL 454
>SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 238
Score = 27.1 bits (57), Expect = 2.9
Identities = 18/81 (22%), Positives = 35/81 (43%)
Frame = +2
Query: 260 QEELNDLLAKLDELQAQAKNDVELTKATLTAANEIYKTLKEFSDQVTESHKQAIQATMDV 439
QEE LL +E Q E K + + + F++ + + H++ ++
Sbjct: 32 QEERKKLLNNKNEYLRQLSEINEAQKKAEKSLEQTEARKQNFTELLEKEHEEQAITEQEI 91
Query: 440 PAVQEKVAAAEESINSITEEL 502
+ QEK+ A + ++EEL
Sbjct: 92 FSFQEKLDAMLKRKQKLSEEL 112
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 26.6 bits (56), Expect = 3.8
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +2
Query: 263 EELNDLLAKLDELQAQAKNDVELTKATLTAANEIYK 370
E N A L KN++ LT A L + +EIYK
Sbjct: 142 ENTNVCKASLYRFMLMCKNELGLTDAALFSISEIYK 177
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 26.2 bits (55), Expect = 5.0
Identities = 15/61 (24%), Positives = 25/61 (40%)
Frame = +2
Query: 359 EIYKTLKEFSDQVTESHKQAIQATMDVPAVQEKVAAAEESINSITEELVAPVTRRRRPGT 538
+I EFS+ +S + + + VP +QE + N+ EL+A T
Sbjct: 1825 DISLEFNEFSNNEDDSELERLSKLIKVPPLQELYSQMSSDENNQILELIAGWCEHLAQNT 1884
Query: 539 W 541
W
Sbjct: 1885 W 1885
>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 310
Score = 26.2 bits (55), Expect = 5.0
Identities = 29/116 (25%), Positives = 46/116 (39%), Gaps = 14/116 (12%)
Frame = +2
Query: 287 KLDELQAQAKNDVELTKATLTAANEIYKTLKEFSDQVTESHKQAIQATMDVPAVQEKVAA 466
+L+++ E + LTA EI ++L + +E K A D ++++
Sbjct: 7 QLEKISGSFTRLAEAFQLALTACREIEESLPSILGEKSEVSKPFKPAVTDPSNAKKEINM 66
Query: 467 AEESINS-------ITEELVAPV-------TRRRRPGTWPSKRKRNMPTKLLRPPT 592
A ES + T VAPV T P+KRK P + RPP+
Sbjct: 67 AIESPSKKATSPKKATPAAVAPVEATSAVDTSEAVASMTPNKRKARDPAQPKRPPS 122
>SPBC25B2.07c |mug164||microtubule-associated
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 26.2 bits (55), Expect = 5.0
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 536 TWPSKRKRNMPTKLLRPPTKSRRKRP 613
T PSK K N TK++RP + ++ RP
Sbjct: 266 TSPSKVKVNASTKIVRPVSAAQTVRP 291
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 26.2 bits (55), Expect = 5.0
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +2
Query: 266 ELNDLLAKLDELQAQAKNDVELTKATLTAANEIYKTLKEFSDQVTESHK 412
E +DL K + ++KN +EL TA + + L E S+ V HK
Sbjct: 471 EKSDLWIKSLRQEYESKNLLELLDKHQTALSSVENRLDEISEIVDSYHK 519
Score = 25.8 bits (54), Expect = 6.6
Identities = 19/94 (20%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
Frame = +2
Query: 269 LNDLLAKLDELQAQAKNDVELTKATLTAANEIYKTLKEFSDQ----VTESHK----QAIQ 424
LN+L ++ ++L+A + + ++ + ANE L E++ + V+ K +
Sbjct: 910 LNELESEYEKLEADIQEMAQKSRTEILEANEYLHQLNEWNSELRIDVSTKFKCIKEKKSN 969
Query: 425 ATMDVPAVQEKVAAAEESINSITEELVAPVTRRR 526
+V + K+ + ++++ + E L TR R
Sbjct: 970 IGEEVRIIASKIESTDDNLRKLQERLADLRTRER 1003
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 26.2 bits (55), Expect = 5.0
Identities = 22/105 (20%), Positives = 37/105 (35%)
Frame = +2
Query: 311 AKNDVELTKATLTAANEIYKTLKEFSDQVTESHKQAIQATMDVPAVQEKVAAAEESINSI 490
A DV+ A+ I + EF+DQ +T + +A ++I
Sbjct: 347 ASADVQERTHNTNGASPIQDQISEFTDQHQNPSNNDAASTQSILKTAPTQLSASAKTSAI 406
Query: 491 TEELVAPVTRRRRPGTWPSKRKRNMPTKLLRPPTKSRRKRPLPKQ 625
+ VA R R T +P+ +L + R L +Q
Sbjct: 407 SLPEVAKKERNRSNSTNDDYSSTRLPSSVLHRLEALKEARKLSEQ 451
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 25.8 bits (54), Expect = 6.6
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +3
Query: 21 LKRARAVYDEALGLYAEVNTTLLPDIKLNKLHEDSMEMNRTIDEKSAELDRLIAENE 191
LK +YD G+YA + L N+LH E+ I+ +A +R I +N+
Sbjct: 2185 LKLQHQLYDVTFGIYAHIAQQLFLQ---NELHRCGEELYYLIESIAAVQNRGIHQNK 2238
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 25.8 bits (54), Expect = 6.6
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -2
Query: 645 VSQVHSFCFGSGRFLLDFV 589
VS VHSFC RF+ D V
Sbjct: 448 VSAVHSFCGNFRRFMFDIV 466
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 25.4 bits (53), Expect = 8.7
Identities = 21/83 (25%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Frame = +2
Query: 257 RQEELNDLLAKLDELQAQAKNDVELTKATLTAANEIYKT-LKEFSDQVTESHKQAIQATM 433
R+++L + L K++E + ++ N+ TK L+ ANE + KEF ++ + KQ + +
Sbjct: 236 REKDLENRLLKVEEHE-KSLNE-RATK--LSEANENFNNRFKEFEEREKSAIKQNKEQSS 291
Query: 434 DVPAVQEKVAAAEESINSITEEL 502
+ + +E INS+ +++
Sbjct: 292 EGSKTANQTHEQKELINSLEKKV 314
>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 324
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 640 RDESDKLITRVRSTEKQIEELEKKQPTTCS*RVTQNE 750
R+E +L +++ + KQ++E KKQ +++Q E
Sbjct: 33 REECKELQSKITNLRKQLKEGNKKQKRALQQKISQME 69
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 25.4 bits (53), Expect = 8.7
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = +3
Query: 93 DIKLNKLHEDSMEMNRTIDEKSAELDRLIAENEDTLHNLEEGIRRGRDLLEQGHTGRRNS 272
D L L ED+ + D + + D+LI+ N+ + +N G + R L+ +G+ +S
Sbjct: 779 DSNLQTLKEDASSTKQAKDSGTNDFDKLISGNDVSKNN--SGEEQSRSALKPLISGKLSS 836
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 637 LRDESDKLITRVRSTEKQIEELEKKQ 714
L + +K+ R+ + EK++EEL K Q
Sbjct: 269 LIQDQEKITNRLSTIEKELEELSKDQ 294
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 356 NEIYKTLKEFSDQVTESHKQAIQATM 433
N ++ TL SDQ SHK + A +
Sbjct: 744 NYVFNTLTSISDQCISSHKYCMDACL 769
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 25.4 bits (53), Expect = 8.7
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +2
Query: 512 VTRRRRPGTWPSKRKRNMPTKLLRPPTKSRRKRPLPKQK 628
VT + G + S+ K+ K+++PP KSR KR K++
Sbjct: 293 VTSIKEKGKFFSRNKK--APKVVKPPRKSRFKRKKKKEQ 329
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 25.4 bits (53), Expect = 8.7
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = +3
Query: 96 IKLNKLHEDSMEMNRTIDEKSAELDRLIAENEDTLHNLEEGIRRGRDLLEQGHTGRRNST 275
++ ++L + +E R + + D+L+AE D + LEE I R L+ + N
Sbjct: 546 VQEDRLPTEVLEKYREAEHQMIATDKLVAETVDRKNALEEYIYDTRAKLDDIYAPFTNEE 605
Query: 276 ISS 284
SS
Sbjct: 606 ESS 608
>SPCC1235.10c |sec6||exocyst complex subunit
Sec6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 730
Score = 25.4 bits (53), Expect = 8.7
Identities = 17/82 (20%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Frame = +2
Query: 266 ELNDLLAKLDELQAQAKNDVELTK--ATLTAANEIYKTLKEFSDQVTESHKQAIQATMDV 439
+LN+L+ + D ++ + D+EL L A+ L+EF ++ ++ +++ D+
Sbjct: 94 QLNNLVKETDVIEDMLREDLELDSDMPNLLRAHYKLSKLREFREEAL--YQASLEGQSDL 151
Query: 440 PAVQEKVAAAEESINSITEELV 505
P E + +++ + LV
Sbjct: 152 PITLENSFSNLNTLSDNFDRLV 173
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,350,084
Number of Sequences: 5004
Number of extensions: 38652
Number of successful extensions: 199
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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