Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00596
         (544 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           23   1.7  
AY600516-1|AAT11864.1|  143|Tribolium castaneum optomotor-blind-...    22   3.0  
AY600515-1|AAT11863.1|  134|Tribolium castaneum optomotor-blind-...    22   3.0  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   5.3  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   5.3  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   7.0  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   7.0  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   7.0  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    21   9.2  

>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -1

Query: 97  TTSNNFWHPVAGYETFNFMTAVNPVEPR 14
           +TSNN WH   G  + N     NP + R
Sbjct: 370 STSNNRWHNNNGNNSNNHWRKNNPNDNR 397


>AY600516-1|AAT11864.1|  143|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 143

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 42  MKLNVSYPATGCQKLFEVVDEHKLRI 119
           M ++   P+TG Q + +VV  HKL++
Sbjct: 54  MYIHPDSPSTGEQWMQKVVSFHKLKL 79


>AY600515-1|AAT11863.1|  134|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 134

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 42  MKLNVSYPATGCQKLFEVVDEHKLRI 119
           M ++   P+TG Q + +VV  HKL++
Sbjct: 54  MYIHPDSPSTGEQWMQKVVSFHKLKL 79


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 255 RCLSGRPVSSGILA 214
           RC++G PVSS  LA
Sbjct: 138 RCVNGIPVSSKTLA 151


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 255 RCLSGRPVSSGILA 214
           RC++G PVSS  LA
Sbjct: 138 RCVNGIPVSSKTLA 151


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 12/43 (27%), Positives = 18/43 (41%)
 Frame = -2

Query: 201 QRHEVHSPSIHRLTDQPLLRRPCAFRKRYEACARPPLRTTSGI 73
           Q H  H P IH     P+L       +      +PP+ ++S I
Sbjct: 88  QLHSHHGPPIHHQIRPPILHDTQPMCESLN--TQPPVTSSSNI 128


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 12/43 (27%), Positives = 18/43 (41%)
 Frame = -2

Query: 201 QRHEVHSPSIHRLTDQPLLRRPCAFRKRYEACARPPLRTTSGI 73
           Q H  H P IH     P+L       +      +PP+ ++S I
Sbjct: 88  QLHSHHGPPIHHQIRPPILHDTQPMCESLN--TQPPVTSSSNI 128


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 12/43 (27%), Positives = 18/43 (41%)
 Frame = -2

Query: 201 QRHEVHSPSIHRLTDQPLLRRPCAFRKRYEACARPPLRTTSGI 73
           Q H  H P IH     P+L       +      +PP+ ++S I
Sbjct: 88  QLHSHHGPPIHHQIRPPILHDTQPMCESLN--TQPPVTSSSNI 128


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = -2

Query: 201 QRHEVHSPSIHRLTDQPLL 145
           Q H  H P IH     P+L
Sbjct: 88  QLHSHHGPPIHHQIRPPIL 106


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,601
Number of Sequences: 336
Number of extensions: 2893
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13306679
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)