Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00596
         (544 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...   146   2e-36
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...   146   2e-36
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    26   4.1  
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc...    25   7.2  
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc...    25   7.2  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    25   9.5  

>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  146 bits (354), Expect = 2e-36
 Identities = 70/98 (71%), Positives = 81/98 (82%), Gaps = 1/98 (1%)
 Frame = +2

Query: 254 RVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPR 433
           RVRLL+  GH CYRPRRDGERKRKSVRGCIV  +L+VLAL IV++G Q+IPGLTD  VP+
Sbjct: 72  RVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIVKQGEQDIPGLTDVTVPK 131

Query: 434 RLGPKRASKIRKLFNLSKEDACTSLVVKR-VLPAKEGK 544
           RLGPKRASKIR+ FNLSKED     V++R V+P KEGK
Sbjct: 132 RLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGK 169



 Score =  101 bits (242), Expect = 7e-23
 Identities = 44/68 (64%), Positives = 53/68 (77%)
 Frame = +3

Query: 42  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 221
           MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++ GGNDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 222 FPMKQGVL 245
           FPM QGVL
Sbjct: 61  FPMFQGVL 68


>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  146 bits (353), Expect = 2e-36
 Identities = 69/98 (70%), Positives = 81/98 (82%), Gaps = 1/98 (1%)
 Frame = +2

Query: 254 RVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPR 433
           RVRLL+  GH CYRPRRDGERKRKSVRGCIV  +L+VLAL I+++G Q+IPGLTD  VP+
Sbjct: 72  RVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIIKQGEQDIPGLTDVTVPK 131

Query: 434 RLGPKRASKIRKLFNLSKEDACTSLVVKR-VLPAKEGK 544
           RLGPKRASKIR+ FNLSKED     V++R V+P KEGK
Sbjct: 132 RLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGK 169



 Score =  101 bits (242), Expect = 7e-23
 Identities = 44/68 (64%), Positives = 53/68 (77%)
 Frame = +3

Query: 42  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 221
           MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++ GGNDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 222 FPMKQGVL 245
           FPM QGVL
Sbjct: 61  FPMFQGVL 68


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = -1

Query: 502 RTCIFFAKVEQLTDFGSTFGT*TAGYISISQSRNFLGTLAHNNKSQD 362
           R  I + K E +   GSTFG   +G       R++   L H+N  QD
Sbjct: 96  RVVIIWHKEEAIPGLGSTFG---SGEKHTENWRSYRRLLGHDNDIQD 139


>SPAC31A2.14 |||WD repeat protein, human WRDR48
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 62  PGNGMPEVVRSGGRAQASYLLR 127
           PG+G+P +V    R  AS +LR
Sbjct: 867 PGSGLPLIVNENTRLSASAMLR 888


>SPAC6B12.05c |||chromatin remodeling complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 295

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 227 DETGRPDKQRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVD 349
           +E    D     ++ SK +S  +P+  G  KRK+ R  +VD
Sbjct: 85  EEEEEEDATPEPVVTSKKNSRSKPKNGGASKRKASRRTVVD 125


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1441

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = -2

Query: 237  PVSSGILACRCRQRHEVHSPSIHRLTDQPLLRRPCAFRKRYEACARPPLRTTS 79
            P+SS I        H  H+P  +   D+    R C F++ +E   + P +  S
Sbjct: 970  PISSNIPILSVAPFHAHHAPQGYIYVDENSFIRICKFQEDFEYDNKWPYKKVS 1022


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,366,171
Number of Sequences: 5004
Number of extensions: 48458
Number of successful extensions: 107
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)