Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00596
(544 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706... 118 4e-27
03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560... 116 1e-26
09_04_0727 + 19765175-19765384,19765523-19765595,19766476-197665... 29 3.2
08_02_0911 + 22530370-22530497,22531083-22531126,22531224-225312... 28 5.5
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 27 7.3
01_07_0254 + 42318181-42319471,42319581-42319792,42319909-423201... 27 7.3
09_01_0050 + 853712-855368,855440-856113 27 9.7
04_01_0377 - 4970034-4970687 27 9.7
03_05_1091 + 30322035-30322739,30322861-30324043,30324114-303251... 27 9.7
03_02_0752 - 10922456-10922644,10922719-10922796,10922888-109230... 27 9.7
01_06_1031 - 33945681-33945822,33946502-33946641,33946748-339469... 27 9.7
>07_03_1309 +
25669394-25669399,25669520-25669584,25670543-25670600,
25670683-25670791,25670872-25671144,25671348-25671589
Length = 250
Score = 118 bits (283), Expect = 4e-27
Identities = 66/116 (56%), Positives = 78/116 (67%), Gaps = 10/116 (8%)
Frame = +2
Query: 227 DETGRPDKQ------RVRLLMSKGHSCYRP--RRDGERKRKSVRGCIVDANLSVLALVIV 382
D+ G P KQ RVRLL+ +G C+R RRDGER+RKSVRGCIV +LSV+ LVIV
Sbjct: 57 DKQGFPMKQGVLTAGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIV 116
Query: 383 RKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDACTSLV--VKRVLPAKEGK 544
+KG ++PGLTD PR GPKRASKIRKLFNLSK+D V +R K GK
Sbjct: 117 KKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRTFTTKNGK 172
Score = 99.1 bits (236), Expect = 2e-21
Identities = 42/69 (60%), Positives = 53/69 (76%)
Frame = +3
Query: 42 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 221
MK N++ P TGCQK E+ D+ KLR F++KR+ EV D LG+E+KGYV ++ GG DKQG
Sbjct: 1 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 222 FPMKQGVLT 248
FPMKQGVLT
Sbjct: 61 FPMKQGVLT 69
>03_03_0207 -
15455163-15455389,15455623-15455895,15455991-15456099,
15456186-15456243,15457002-15457066,15457190-15457195
Length = 245
Score = 116 bits (279), Expect = 1e-26
Identities = 65/116 (56%), Positives = 78/116 (67%), Gaps = 10/116 (8%)
Frame = +2
Query: 227 DETGRPDKQ------RVRLLMSKGHSCYRP--RRDGERKRKSVRGCIVDANLSVLALVIV 382
D+ G P KQ RVRLL+ +G C+R RRDGER+RKSVRGCIV +LSV+ LVIV
Sbjct: 57 DKQGFPMKQGVLTSGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIV 116
Query: 383 RKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDACTSLV--VKRVLPAKEGK 544
+KG ++PGLTD PR GPKRASKIRKLFNL+K+D V +R K GK
Sbjct: 117 KKGDNDLPGLTDTEKPRMRGPKRASKIRKLFNLAKDDDVRKYVNTYRRTFTTKNGK 172
Score = 101 bits (241), Expect = 5e-22
Identities = 43/70 (61%), Positives = 54/70 (77%)
Frame = +3
Query: 42 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 221
MK N++ P TGCQK E+ D+ KLR FY+KR+ EV D LG+E+KGYV ++ GG DKQG
Sbjct: 1 MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 222 FPMKQGVLTN 251
FPMKQGVLT+
Sbjct: 61 FPMKQGVLTS 70
>09_04_0727 +
19765175-19765384,19765523-19765595,19766476-19766570,
19766666-19768450,19768533-19768721,19768816-19768958,
19769075-19769320,19769975-19770059,19770117-19770191,
19770304-19770369,19770466-19770712,19770824-19771242
Length = 1210
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +2
Query: 197 RWRQRQARIPDE-TGRPDKQRVRLLMSKGHSCYRPRRDGERKRKSVRG 337
R+R + ++ DE + RP ++++ +S PRR+G R R+S+RG
Sbjct: 129 RYRSSKNKVDDEVSARPKRKKL------SNSSSIPRREGLRPRRSIRG 170
>08_02_0911 +
22530370-22530497,22531083-22531126,22531224-22531267,
22531428-22531946,22532032-22532257,22532336-22532662,
22532915-22533165,22533374-22534072
Length = 745
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -2
Query: 270 IRRRTRCLSGRPVSSGILACRCRQRHEVHSPSIHRLTDQPLLRR 139
+ +RTR L V I+ RCR R+ H L D+ L+R+
Sbjct: 83 VHQRTRTLGVLAVVLAIIHWRCRIRNRRHPRKYGPLVDRDLVRK 126
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 27.5 bits (58), Expect = 7.3
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = +2
Query: 209 RQARIPDET--GRPDKQRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIV 382
++ +IP + GR +K+R S + + PRR R + R C++D + + +
Sbjct: 629 QRGQIPSDALPGRTNKKR----KSTADTSFNPRRRTSRPENASRACVLDGSTTQNRFQFI 684
Query: 383 RKGAQ 397
R+ A+
Sbjct: 685 REEAE 689
>01_07_0254 +
42318181-42319471,42319581-42319792,42319909-42320132,
42320232-42321009
Length = 834
Score = 27.5 bits (58), Expect = 7.3
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +3
Query: 78 QKLF-EVVDEHKLRIFYEKRMGAEVEADQLG 167
+KL+ E+ DE KLRI YEK+ D+ G
Sbjct: 494 KKLYQEIKDEEKLRILYEKKYRRLKSLDERG 524
>09_01_0050 + 853712-855368,855440-856113
Length = 776
Score = 27.1 bits (57), Expect = 9.7
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Frame = -2
Query: 147 LRRPCAFRKRYEACARP---PLRTTSGIPLPGTKRLTS*LRSIPSNLVPLVP 1
++RP AF E C RP + + P+ GT R + +IP N +P
Sbjct: 267 VQRPTAFAGNAELCGRPLDSLCASAADPPINGTARSPPAIAAIPKNPTEALP 318
>04_01_0377 - 4970034-4970687
Length = 217
Score = 27.1 bits (57), Expect = 9.7
Identities = 14/45 (31%), Positives = 18/45 (40%)
Frame = +1
Query: 328 SSWMYC*RQSLGLGSCYCAQGCPGNSWID*WKCTPPSRSQTCFQN 462
S W YC GLGS +C GC + +C + C N
Sbjct: 123 SQWGYC-----GLGSEFCGNGCQSGACCPEKRCGKQAGGDKCPNN 162
>03_05_1091 +
30322035-30322739,30322861-30324043,30324114-30325105,
30326409-30326798,30326896-30330060
Length = 2144
Score = 27.1 bits (57), Expect = 9.7
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = +2
Query: 203 RQRQARIPDETGRPDKQRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALV 376
R QA+ P E R K R GH R D +R+R++ C +SVL L+
Sbjct: 63 RAVQAKPPVEPPRRRKARDAADHDIGH-----RLDAKRRRRAASACTAQREVSVLTLI 115
>03_02_0752 -
10922456-10922644,10922719-10922796,10922888-10923016,
10923105-10923152,10923243-10923333,10923517-10923648,
10923869-10924086,10925121-10925271,10925360-10926009,
10926715-10926786,10926938-10926985,10927105-10927242,
10927750-10927756,10928064-10928212
Length = 699
Score = 27.1 bits (57), Expect = 9.7
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 131 LFVKDTKLVLVHHFEQLLASRCRVRNV*LHDCGQS 27
LF+ T V + F+ L RC V + LH C Q+
Sbjct: 76 LFLDKTMDVALDSFDNLFCRRCLVFDCRLHGCSQN 110
>01_06_1031 -
33945681-33945822,33946502-33946641,33946748-33946995,
33947355-33947576,33948188-33948839
Length = 467
Score = 27.1 bits (57), Expect = 9.7
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 221 IPDETGRPDKQRVRLLMSKGHSCYRPRRDGERK 319
I DET ++R+ M++GHS YRP G+ K
Sbjct: 432 IRDETMYDPRERIE--MAQGHSLYRPSLLGQPK 462
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,765,382
Number of Sequences: 37544
Number of extensions: 377899
Number of successful extensions: 1063
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1062
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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