Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00596
(544 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B) 115 2e-26
At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) riboso... 114 3e-26
At1g21740.1 68414.m02721 expressed protein contains Pfam domains... 30 1.1
At1g67280.1 68414.m07657 lactoylglutathione lyase, putative / gl... 29 2.7
At2g16390.1 68415.m01876 SNF2 domain-containing protein / helica... 28 4.6
At2g34070.1 68415.m04171 expressed protein 27 6.1
At5g49340.1 68418.m06105 expressed protein similar to unknown pr... 27 8.1
At4g31240.2 68417.m04435 expressed protein 27 8.1
At4g31240.1 68417.m04434 expressed protein 27 8.1
>At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)
Length = 249
Score = 115 bits (277), Expect = 2e-26
Identities = 66/116 (56%), Positives = 77/116 (66%), Gaps = 10/116 (8%)
Frame = +2
Query: 227 DETGRPDKQ------RVRLLMSKGHSCYRP--RRDGERKRKSVRGCIVDANLSVLALVIV 382
D+ G P KQ RVRLL+ +G C+R RR GER+RKSVRGCIV +LSVL LVIV
Sbjct: 57 DKQGFPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIV 116
Query: 383 RKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDACTSLV--VKRVLPAKEGK 544
+KG ++PGLTD PR GPKRASKIRKLFNL KED V +R K+GK
Sbjct: 117 KKGVSDLPGLTDTEKPRMRGPKRASKIRKLFNLGKEDDVRKYVNTYRRTFTNKKGK 172
Score = 99 bits (238), Expect = 9e-22
Identities = 43/69 (62%), Positives = 53/69 (76%)
Frame = +3
Query: 42 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 221
MK NV+ P TGCQK E+ D+ KLR F++KR+ EV D LG+E+KGYV ++ GG DKQG
Sbjct: 1 MKFNVANPTTGCQKKLEIDDDQKLRAFFDKRLSQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 222 FPMKQGVLT 248
FPMKQGVLT
Sbjct: 61 FPMKQGVLT 69
>At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) ribosomal
protein S6, Arabidopsis thaliana, PID:g2662469
Length = 250
Score = 114 bits (275), Expect = 3e-26
Identities = 66/116 (56%), Positives = 78/116 (67%), Gaps = 10/116 (8%)
Frame = +2
Query: 227 DETGRPDKQ------RVRLLMSKGHSCYRP--RRDGERKRKSVRGCIVDANLSVLALVIV 382
D+ G P KQ RVRLL+ +G C+R RR GER+RKSVRGCIV +LSVL LVIV
Sbjct: 57 DKQGFPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIV 116
Query: 383 RKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDACTSLV--VKRVLPAKEGK 544
+KG ++PGLTD PR GPKRASKIRKLFNL KED + V +R K+GK
Sbjct: 117 KKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLKKEDDVRTYVNTYRRKFTNKKGK 172
Score = 101 bits (241), Expect = 4e-22
Identities = 44/69 (63%), Positives = 53/69 (76%)
Frame = +3
Query: 42 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 221
MK NV+ P TGCQK E+ D+ KLR FY+KR+ EV D LG+E+KGYV ++ GG DKQG
Sbjct: 1 MKFNVANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIKGGCDKQG 60
Query: 222 FPMKQGVLT 248
FPMKQGVLT
Sbjct: 61 FPMKQGVLT 69
>At1g21740.1 68414.m02721 expressed protein contains Pfam domains,
PF04782: Protein of unknown function (DUF632) and
PF04783: Protein of unknown function (DUF630)
Length = 953
Score = 29.9 bits (64), Expect = 1.1
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 27 GLTAVMKLNVSYPATGCQKLF-EVVDEHKLRIFYEKRMGAEVEADQLGDE 173
GLT + + +KL+ EV DE KLR+ YE++ + D LG E
Sbjct: 585 GLTGNLSATLEQLYAWEKKLYKEVKDEEKLRVVYEEKCRTLKKLDSLGAE 634
>At1g67280.1 68414.m07657 lactoylglutathione lyase, putative /
glyoxalase I, putative similar to putative
lactoylglutathione lyase SP:Q39366, GI:2494843 from
[Brassica oleracea]
Length = 350
Score = 28.7 bits (61), Expect = 2.7
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +3
Query: 63 PATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPM 230
P CQ + V D + FYEK G E+ + E+K Y + + G + FP+
Sbjct: 216 PEPLCQVMLRVGDLDRAIKFYEKAFGMELLRTRDNPEYK-YTIAMMGYGPEDKFPV 270
>At2g16390.1 68415.m01876 SNF2 domain-containing protein / helicase
domain-containing protein low similarity to RAD54
[Drosophila melanogaster] GI:1765914; contains Pfam
profiles PF00271: Helicase conserved C-terminal domain,
PF00176: SNF2 family N-terminal domain
Length = 888
Score = 27.9 bits (59), Expect = 4.6
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 398 EIPGLTDGNVPRRLGPKRASKIRKL 472
E+PGL D V L PK+ ++++KL
Sbjct: 620 ELPGLADFTVVLNLSPKQLNEVKKL 644
>At2g34070.1 68415.m04171 expressed protein
Length = 385
Score = 27.5 bits (58), Expect = 6.1
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +2
Query: 236 GRPDKQRVRLLMSKGHSCYRPRRDGERKRKSVRG 337
GRPDKQ ++ SC PR DGE K RG
Sbjct: 99 GRPDKQFLKYSWQPD-SCTVPRFDGEAFLKKWRG 131
>At5g49340.1 68418.m06105 expressed protein similar to unknown
protein (emb|CAB82953.1)
Length = 457
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 230 ETGRPDKQRVRLLMSKGHSCYRPRRDGERKRKSVRG 337
+ GRPD +R H C PR DG++ K +RG
Sbjct: 132 KNGRPDSGFLRHRWQP-HGCSIPRFDGKKMLKMLRG 166
>At4g31240.2 68417.m04435 expressed protein
Length = 392
Score = 27.1 bits (57), Expect = 8.1
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -3
Query: 236 LFHRESLLVVAASDTKYIALPFIA*LISLYFGAH 135
L H VVA + +K + + I LYFGAH
Sbjct: 180 LTHESRNYVVARNGSKVLVSKLVGKTIGLYFGAH 213
>At4g31240.1 68417.m04434 expressed protein
Length = 392
Score = 27.1 bits (57), Expect = 8.1
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -3
Query: 236 LFHRESLLVVAASDTKYIALPFIA*LISLYFGAH 135
L H VVA + +K + + I LYFGAH
Sbjct: 180 LTHESRNYVVARNGSKVLVSKLVGKTIGLYFGAH 213
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,845,825
Number of Sequences: 28952
Number of extensions: 276236
Number of successful extensions: 722
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1013649368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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