Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00595
         (784 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces pomb...    75   2e-14
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    65   9e-12
SPBC2A9.02 |||NAD dependent epimerase/dehydratase family protein...    33   0.035
SPAC11E3.09 |pyp3||protein-tyrosine phosphatase Pyp3|Schizosacch...    28   1.7  
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce...    26   5.3  
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.3  
SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr 3|||M...    26   5.3  
SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase family|...    26   7.0  
SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   9.3  

>SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 74.5 bits (175), Expect = 2e-14
 Identities = 33/76 (43%), Positives = 48/76 (63%)
 Frame = +1

Query: 268 ALQRAEKITGKKITFYKADLLDKPQINAIFDKHPVDCVIHFAALKAVGESMXXXXXXXXX 447
           A+ R EK+TGKK+ F++ DLLD+P ++ +F    +  VIHFA LKAVGES+         
Sbjct: 46  AVHRIEKLTGKKVIFHQVDLLDEPALDKVFANQNISAVIHFAGLKAVGESVQVPLSYYKN 105

Query: 448 XXXGMLNLLEIMRSHN 495
              G +NL+E M+ +N
Sbjct: 106 NISGTINLIECMKKYN 121



 Score = 52.4 bits (120), Expect = 7e-08
 Identities = 29/63 (46%), Positives = 38/63 (60%), Gaps = 4/63 (6%)
 Frame = +3

Query: 510 FSSSCTVYGEPEH----LPITETHPTGSITNVYGRTKYFIEEMLKDLSAADDKWNIISLR 677
           FSSS TVYG+P      +PI E+ P    T+ YGRTK FIE +++D +  +   N   LR
Sbjct: 127 FSSSATVYGDPTRPGGTIPIPESCPREG-TSPYGRTKLFIENIIEDETKVNKSLNAALLR 185

Query: 678 YFN 686
           YFN
Sbjct: 186 YFN 188



 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 17/30 (56%), Positives = 22/30 (73%)
 Frame = +2

Query: 155 GRSGYIGSHCVVTLLEAGHEVIAIDNFTNS 244
           G +GYIGSH  V LLE G++V+ +DN  NS
Sbjct: 13  GGAGYIGSHTCVVLLEKGYDVVIVDNLCNS 42



 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 17/34 (50%), Positives = 23/34 (67%)
 Frame = +2

Query: 680 FQPVGAHPSGLIGEDPTKEFTNLMPFLAKLLSAR 781
           F P GAHPSG +GEDP     NL+P++A++   R
Sbjct: 187 FNPGGAHPSGELGEDPLGIPNNLLPYIAQVAVGR 220


>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 65.3 bits (152), Expect = 9e-12
 Identities = 35/75 (46%), Positives = 41/75 (54%)
 Frame = +1

Query: 268 ALQRAEKITGKKITFYKADLLDKPQINAIFDKHPVDCVIHFAALKAVGESMXXXXXXXXX 447
           A+ R E I  K I F+K DL DK  +  IFD   +  VIHFAALKAVGESM         
Sbjct: 45  AVARVEFIVRKSIKFFKLDLRDKEGLAQIFDTFKIKGVIHFAALKAVGESMKLPLEYYDN 104

Query: 448 XXXGMLNLLEIMRSH 492
              G + LL +MR H
Sbjct: 105 NICGTITLLNVMREH 119



 Score = 58.8 bits (136), Expect = 8e-10
 Identities = 31/63 (49%), Positives = 39/63 (61%), Gaps = 4/63 (6%)
 Frame = +3

Query: 510 FSSSCTVYGEPEH----LPITETHPTGSITNVYGRTKYFIEEMLKDLSAADDKWNIISLR 677
           FSSS TVYG+       +PI E+ P    TN YG+TKY IE ++KDL  +D+ W    LR
Sbjct: 126 FSSSATVYGDATRFDNMIPIPESCPNDP-TNPYGKTKYAIENIIKDLHTSDNTWRGAILR 184

Query: 678 YFN 686
           YFN
Sbjct: 185 YFN 187



 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 20/34 (58%), Positives = 25/34 (73%)
 Frame = +2

Query: 680 FQPVGAHPSGLIGEDPTKEFTNLMPFLAKLLSAR 781
           F P+GAHPSGL+GEDP     NL+PFLA++   R
Sbjct: 186 FNPIGAHPSGLLGEDPLGIPNNLLPFLAQVAIGR 219



 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 17/33 (51%), Positives = 23/33 (69%)
 Frame = +2

Query: 155 GRSGYIGSHCVVTLLEAGHEVIAIDNFTNSVED 253
           G +GYIGSH V+ L+  G++VI +DN  NS  D
Sbjct: 12  GGAGYIGSHTVIELINHGYKVIIVDNLCNSCYD 44


>SPBC2A9.02 |||NAD dependent epimerase/dehydratase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 33.5 bits (73), Expect = 0.035
 Identities = 14/24 (58%), Positives = 18/24 (75%)
 Frame = +2

Query: 155 GRSGYIGSHCVVTLLEAGHEVIAI 226
           G +G+IGS  V  LLEAGHEV+ +
Sbjct: 7   GAAGFIGSEIVRQLLEAGHEVVGL 30


>SPAC11E3.09 |pyp3||protein-tyrosine phosphatase
           Pyp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 303

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 24/91 (26%), Positives = 39/91 (42%)
 Frame = -3

Query: 518 RREPIW*QLCDRIISNKLSIPSRLFW*YNKGCCIDSPTALSAAKWITQSTGCLSKIALIC 339
           R +P+W + CD I ++ + IPS   +   +G   +S        W  QS      I ++ 
Sbjct: 67  RLDPMWKEACDYINASIVKIPSGKTFIATQGPTSNSIDVFWKMVW--QSVPKSGIIVMLT 124

Query: 338 GLSSKSAL*NVIFFPVIFSALCKAGDPSRLL 246
            L  +  L   I++PV        GD S +L
Sbjct: 125 KLRERHRLKCDIYWPVELFETLNIGDLSVIL 155


>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 357

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 387 FCGTQSSWGIDAATLIILPEQPAWDAQLIGD 479
           F G  + WG    TL  L E PAW  + +G+
Sbjct: 90  FRGIVNEWGRSERTLDSLDEPPAWFRREMGE 120


>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 6/25 (24%), Positives = 17/25 (68%)
 Frame = +3

Query: 630 KDLSAADDKWNIISLRYFNLSVHIL 704
           + L+ +++ W  +S+  F +S+H++
Sbjct: 180 RQLNTSENNWTCLSIENFGISIHVI 204


>SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 325

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 677 VFQPVGAHPSGLIGEDPTKEFTNLMPFLAKLLSA 778
           VFQ  G  P G +     ++F NL+P L ++ SA
Sbjct: 292 VFQDAGIKPQGELLLMTNEDFKNLVPKLMEIYSA 325


>SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 336

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 155 GRSGYIGSHCVVTLLEAGHEV 217
           G +G+IG+H    LL+AG+ V
Sbjct: 10  GVTGFIGAHVAEQLLQAGYRV 30


>SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 481

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +2

Query: 2   GTSEHELLARKIVISLIINRTIAVKLVYGRFKVNGSKKLRNNAAIQ 139
           G++ HE L  K V+    N  +AV L+Y  FK  G     + A +Q
Sbjct: 203 GSAIHEQLEGKEVV----NELVAVYLIYTVFKDQGISSKAHKALVQ 244


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,037,283
Number of Sequences: 5004
Number of extensions: 60078
Number of successful extensions: 162
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)