Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00595
(784 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30795| Best HMM Match : Epimerase (HMM E-Value=0) 97 2e-20
SB_16975| Best HMM Match : MFS_1 (HMM E-Value=2.6e-24) 30 1.8
SB_4795| Best HMM Match : CLN3 (HMM E-Value=0.058) 30 1.8
SB_45640| Best HMM Match : Epimerase (HMM E-Value=9.4e-38) 29 4.2
SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_42322| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
SB_18254| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
>SB_30795| Best HMM Match : Epimerase (HMM E-Value=0)
Length = 869
Score = 96.7 bits (230), Expect = 2e-20
Identities = 42/59 (71%), Positives = 50/59 (84%)
Frame = +3
Query: 510 FSSSCTVYGEPEHLPITETHPTGSITNVYGRTKYFIEEMLKDLSAADDKWNIISLRYFN 686
FSSS TVYG+P+ LPITE+HP G TN YG+TKYFIEEMLKDL A+ ++NI+SLRYFN
Sbjct: 159 FSSSATVYGDPQFLPITESHPAGGCTNPYGKTKYFIEEMLKDLCYAEKEFNIVSLRYFN 217
Score = 69.7 bits (163), Expect = 2e-12
Identities = 33/79 (41%), Positives = 49/79 (62%)
Frame = +1
Query: 271 LQRAEKITGKKITFYKADLLDKPQINAIFDKHPVDCVIHFAALKAVGESMXXXXXXXXXX 450
++R E+I+GKK+ F+ DLL+K ++ IF KH + V+HFA LKAVGES+
Sbjct: 79 VRRVEEISGKKVPFFIEDLLNKEALDDIFKKHKFNGVLHFAGLKAVGESVQIPLRYYHNN 138
Query: 451 XXGMLNLLEIMRSHNCYQM 507
G L+LLE M+ H + +
Sbjct: 139 LTGTLHLLECMKKHGVHNL 157
Score = 49.2 bits (112), Expect = 4e-06
Identities = 20/30 (66%), Positives = 25/30 (83%)
Frame = +2
Query: 155 GRSGYIGSHCVVTLLEAGHEVIAIDNFTNS 244
G +GYIGSHCVV +L AG+EV+ IDN +NS
Sbjct: 45 GGAGYIGSHCVVEILNAGYEVVIIDNLSNS 74
Score = 39.1 bits (87), Expect = 0.004
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +2
Query: 680 FQPVGAHPSGLIGEDPTKEFTNLMPFLAKL 769
F PVGAH SG IGEDP NL+P++ ++
Sbjct: 216 FNPVGAHKSGKIGEDPKDIPNNLLPYITQV 245
>SB_16975| Best HMM Match : MFS_1 (HMM E-Value=2.6e-24)
Length = 1193
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +1
Query: 283 EKITGKKITFYKADLLDKPQINAIFDKHPV 372
E+I G ++ FY ADL+ + +NA+ + PV
Sbjct: 547 ERIKGIRVIFYMADLIPECIVNAVLYRRPV 576
>SB_4795| Best HMM Match : CLN3 (HMM E-Value=0.058)
Length = 878
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/73 (24%), Positives = 29/73 (39%)
Frame = -1
Query: 247 YRVSEVVNCNDLMTGFQQCDYAMTSYVSAPPVTNMFLNRGIIS*FFTSINFKSTVH*FYS 68
Y ++ N MT Y MT+Y + + I +T N+ T + Y+
Sbjct: 291 YTMTAYTGSNYTMTAHTGSSYTMTAYTGSNYTMTAYTGFNYIMTAYTGSNYTMTAYTGYN 350
Query: 67 NSSIDY*TNDNFT 29
N+ Y T N+T
Sbjct: 351 NTMTAY-TGSNYT 362
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/74 (22%), Positives = 30/74 (40%)
Frame = -1
Query: 250 FYRVSEVVNCNDLMTGFQQCDYAMTSYVSAPPVTNMFLNRGIIS*FFTSINFKSTVH*FY 71
+Y ++ N +MTG Y MT+Y + + +T N+ T H
Sbjct: 750 YYTMTAYTGSNYIMTGHTGSYYTMTAYTVSSYTMTAYTGSNYTMTAYTGSNYTMTAH-TV 808
Query: 70 SNSSIDY*TNDNFT 29
SN ++ T ++T
Sbjct: 809 SNYTMTARTGSSYT 822
Score = 27.9 bits (59), Expect = 9.8
Identities = 17/73 (23%), Positives = 30/73 (41%)
Frame = -1
Query: 250 FYRVSEVVNCNDLMTGFQQCDYAMTSYVSAPPVTNMFLNRGIIS*FFTSINFKSTVH*FY 71
+Y ++ N +MTG +Y MT+Y + + I T N+ T +
Sbjct: 580 YYTMTAYTGSNYIMTGHTGSNYTMTAYTGSNYTMTAYTGSSYIMTGHTGSNYTMTAY-TG 638
Query: 70 SNSSIDY*TNDNF 32
SN ++ T N+
Sbjct: 639 SNYTVTAYTGSNY 651
>SB_45640| Best HMM Match : Epimerase (HMM E-Value=9.4e-38)
Length = 451
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +2
Query: 68 AVKLVYGRFKVNGSKKLRNNAAIQEHIS-DGRSGYIGSHCVVTLLEAGHEVIAIDNF 235
+ K+ NG+ H+ G +GY+GS V LL+ G++V D F
Sbjct: 117 STKVKENHISTNGTTTTNMGPIKYPHVLVTGGAGYLGSSLVPILLDQGYKVTVYDRF 173
>SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1870
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 253 RDGSPALQRAEKITGKKITFYKADLLDKPQINAIFD 360
R+G P L+ + + GKK + K LLD Q N +++
Sbjct: 1195 RNGQPTLETLKPLNGKK-PYRKLSLLDAQQANIMYN 1229
>SB_42322| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 294
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +1
Query: 304 ITFYKADLLDKPQINAIFDKHPVDCVIHFAALKAVGES 417
I K D+ + + IF +D V+HFAA V S
Sbjct: 50 INLDKGDICEANHLKYIFQAEQIDTVLHFAAQSHVDNS 87
>SB_18254| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 353
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 502 QMGSRRHAQSTANLNTCRSRRLIPLEVSQ 588
Q+G RHA+ST L C+ L+ L V +
Sbjct: 3 QLGCSRHAKSTIILRLCKKSSLVALVVRE 31
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,120,998
Number of Sequences: 59808
Number of extensions: 475225
Number of successful extensions: 1590
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1583
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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