Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00595
         (784 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    24   1.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   5.6  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   7.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   9.8  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   9.8  

>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
 Frame = -1

Query: 247 YRVSEVVNCNDLMTGFQQC----DYAMTSYVSAPPVTNMFLN-RGII 122
           Y V E VN  DLM   QQC    +     Y S   +   FL+ RGI+
Sbjct: 61  YFVMEYVNGGDLMYQIQQCGKFKEPVAVFYASEIAIGLFFLHGRGIV 107


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 732 LVGSSPISPEGCAPTG*NTG 673
           ++ +SP+  EG  PTG  TG
Sbjct: 387 IILASPLKREGGPPTGATTG 406


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 238 SEVVNCNDLMTGFQ 197
           S++ NCN LMT F+
Sbjct: 179 SDLDNCNHLMTKFE 192


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 683 QPVGAHPSGLIGEDPTKE 736
           QP   HP  L+G++  K+
Sbjct: 107 QPYRPHPHNLVGKEACKQ 124


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 683 QPVGAHPSGLIGEDPTKE 736
           QP   HP  L+G++  K+
Sbjct: 107 QPYRPHPHNLVGKEACKQ 124


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,992
Number of Sequences: 438
Number of extensions: 4274
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)