Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00593
         (786 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC211.05 |||splicing factor 3B|Schizosaccharomyces pombe|chr 2...    71   2e-13
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz...    28   1.7  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    28   1.7  
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb...    27   2.3  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    25   9.3  
SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyc...    25   9.3  

>SPBC211.05 |||splicing factor 3B|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 85

 Score = 70.9 bits (166), Expect = 2e-13
 Identities = 28/52 (53%), Positives = 40/52 (76%)
 Frame = +3

Query: 96  MGERYNIHSQLEHLQSKYIGTGHADTTKYEWLMNQHRDSCCSYMGHPDLLSY 251
           M +R    ++LE LQ++Y+G G+A TTKYEW++NQHRD+  S +GHP LL+Y
Sbjct: 1   MADRLRSQAKLEQLQARYVGVGNAFTTKYEWMVNQHRDTLSSVVGHPPLLAY 52



 Score = 35.9 bits (79), Expect = 0.007
 Identities = 12/22 (54%), Positives = 18/22 (81%)
 Frame = +2

Query: 269 ESKARVKFNLMERMLQPCGPPP 334
           E + +V+ NL+E+M+ PCGPPP
Sbjct: 59  EPRVQVRKNLLEKMIMPCGPPP 80


>SPBC646.09c |int6|yin6|translation initiation factor
           eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +3

Query: 126 LEHLQSKYIGTGHADTTKYEWLMNQHRDSCCSYMGHPDLLSYFRS 260
           L+HLQ  Y  T       Y++   Q+  +C +Y G  DLL +FR+
Sbjct: 127 LQHLQEHYNITPERIAVLYKFAQFQY--NCGNYGGASDLLYHFRA 169


>SPAC110.02 |pds5||cohesin-associated protein
           Pds5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1205

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 463 KHN*SIQIVPPKTQLYQ*KLQILITGIVYSLELVQW 570
           K N  +Q +   +Q+Y    Q LI G+ YS+++  W
Sbjct: 408 KLNVRLQAIRTLSQIYNRAYQDLIDGVEYSIQMFSW 443


>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 266 FLRSKVTQQIRMTHVTAARVAMLVHKPFI 180
           F   K+T  + MTH+ +A+   L +KP I
Sbjct: 365 FSSFKITTDLEMTHLESAKKKYLAYKPLI 393


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1297

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = -3

Query: 424  YVMIRDSKSNNK*ISLILFLKSKRLIFRLFWRWAAWLKHSFHQIE 290
            Y  I D    N  +SL      K  +FR  WR A+W K S   ++
Sbjct: 985  YAEIDDRNPEN--VSLYHIALHKINVFRDLWRLASWHKESARTVK 1027


>SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 564 SMVKCLTILFLYTNLFHIVLS 626
           SM   +T LFL+TN F  +LS
Sbjct: 507 SMKSIITALFLFTNAFGAILS 527


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,943,728
Number of Sequences: 5004
Number of extensions: 58640
Number of successful extensions: 128
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)