Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00593
         (786 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0834 - 21626491-21626508,21626720-21626843,21626927-216270...    79   5e-15
08_02_0247 - 14753181-14753669,14754556-14754783,14755082-14755282     28   7.3  
05_02_0043 + 5964749-5966406,5966725-5966791,5967174-5967329,596...    28   7.3  

>08_02_0834 -
           21626491-21626508,21626720-21626843,21626927-21627012,
           21627869-21627874
          Length = 77

 Score = 78.6 bits (185), Expect = 5e-15
 Identities = 31/51 (60%), Positives = 42/51 (82%)
 Frame = +3

Query: 102 ERYNIHSQLEHLQSKYIGTGHADTTKYEWLMNQHRDSCCSYMGHPDLLSYF 254
           +R+NI+SQLEHLQ+KY+GTGHAD  ++EW +N  RDS  SY+GH  +L+YF
Sbjct: 5   DRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYF 55


>08_02_0247 - 14753181-14753669,14754556-14754783,14755082-14755282
          Length = 305

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +2

Query: 206 RLLLQLHGSSGFVELLSIVENESKARVKFNLMERML 313
           R LLQ+ G+SGF+ LL +     + + KF+ +E  L
Sbjct: 2   RDLLQVAGASGFLSLLLLPRATDETQTKFHSLEDTL 37


>05_02_0043 +
           5964749-5966406,5966725-5966791,5967174-5967329,
           5967782-5967865,5968020-5968073
          Length = 672

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 20/47 (42%), Positives = 24/47 (51%)
 Frame = +3

Query: 573 KCLTILFLYTNLFHIVLSQRNQF*FPFSLIYIQSKSVITTSKGLLIF 713
           K L  L L      + LSQ N+F +P SL YI S S   T +G L F
Sbjct: 126 KFLQTLLLDGCFVLVSLSQYNEFLWPDSLRYIPSPSNDKTFEGALSF 172


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,011,977
Number of Sequences: 37544
Number of extensions: 304240
Number of successful extensions: 601
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)