Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00593
         (786 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14342.1 68417.m02209 pre-mRNA splicing factor 10 kDa subunit...    80   1e-15
At3g23325.1 68416.m02942 splicing factor, putative similar to Sp...    80   1e-15

>At4g14342.1 68417.m02209 pre-mRNA splicing factor 10 kDa subunit,
           putative similar to Splicing factor 3B subunit 10
           (SF3b10) (Pre-mRNA splicing factor SF3b 10 kDa subunit)
           (Swiss-Prot:Q9BWJ5) [Homo sapiens]; Conserved in
           Plasmodium, yeast, fly, mouse, human
          Length = 87

 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 32/51 (62%), Positives = 43/51 (84%)
 Frame = +3

Query: 102 ERYNIHSQLEHLQSKYIGTGHADTTKYEWLMNQHRDSCCSYMGHPDLLSYF 254
           +R+NI+SQLEHLQ+KY+GTGHAD +++EW +N  RDS  SY+GH  +LSYF
Sbjct: 5   DRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYIGHYPMLSYF 55



 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 18/41 (43%), Positives = 26/41 (63%)
 Frame = +2

Query: 227 GSSGFVELLSIVENESKARVKFNLMERMLQPCGPPPEKPED 349
           G    +   +I ENES  R ++N M++ML PCG PPE+ E+
Sbjct: 47  GHYPMLSYFAIAENESIGRERYNFMQKMLLPCGLPPEREEE 87


>At3g23325.1 68416.m02942 splicing factor, putative similar to
           Splicing factor 3B subunit 10 (SF3b10) (Pre-mRNA
           splicing factor SF3b 10 kDa subunit) (Swiss-Prot:Q9BWJ5)
           [Homo sapiens]
          Length = 87

 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 32/51 (62%), Positives = 43/51 (84%)
 Frame = +3

Query: 102 ERYNIHSQLEHLQSKYIGTGHADTTKYEWLMNQHRDSCCSYMGHPDLLSYF 254
           +R+NI+SQLEHLQ+KY+GTGHAD +++EW +N  RDS  SY+GH  +LSYF
Sbjct: 5   DRFNINSQLEHLQAKYVGTGHADLSRFEWTVNIQRDSYASYIGHYPMLSYF 55



 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 17/41 (41%), Positives = 26/41 (63%)
 Frame = +2

Query: 227 GSSGFVELLSIVENESKARVKFNLMERMLQPCGPPPEKPED 349
           G    +   +I ENES  R ++N M++ML PCG PPE+ ++
Sbjct: 47  GHYPMLSYFAIAENESIGRERYNFMQKMLLPCGLPPEREDE 87


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,548,915
Number of Sequences: 28952
Number of extensions: 274663
Number of successful extensions: 540
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)