Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00592
         (772 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50883| Best HMM Match : MAM33 (HMM E-Value=1.7e-23)                 42   6e-04
SB_44872| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  

>SB_50883| Best HMM Match : MAM33 (HMM E-Value=1.7e-23)
          Length = 200

 Score = 41.9 bits (94), Expect = 6e-04
 Identities = 18/39 (46%), Positives = 25/39 (64%)
 Frame = +3

Query: 45  MNLLEEKGISNEFVQKLSDFSTAYEHTAYINLLESISKF 161
           +N+L E+G+ N F   L DFSTA EH  YI  L+++  F
Sbjct: 158 LNMLAERGVDNSFGHWLLDFSTAIEHQHYIKFLKNLQGF 196


>SB_44872| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 908

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +1

Query: 211 NISFF-FKYLVSNYIILFASSVQLKFRKSNCYRSNNSTFII 330
           N+  F F Y  S  II     +  K RK  C  +NN+ FI+
Sbjct: 514 NVKLFNFLYFSSICIIFTRDHIDRKLRKGLCIPANNTIFIV 554


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,447,318
Number of Sequences: 59808
Number of extensions: 378201
Number of successful extensions: 734
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)