Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00592
         (772 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g66440.1 68414.m07548 DC1 domain-containing protein contains ...    29   4.5  
At3g56980.1 68416.m06342 basic helix-loop-helix (bHLH) family pr...    28   5.9  

>At1g66440.1 68414.m07548 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 726

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 400 LLLLIEDLKSTNAAQCNCQNSRHLL*MYYCWIC 302
           L L++E+       +C C +   L   YYCW+C
Sbjct: 236 LQLILENSWGCRKKKCYCCDEILLWIFYYCWVC 268


>At3g56980.1 68416.m06342 basic helix-loop-helix (bHLH) family
           protein
          Length = 258

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 675 INLKSHK*SNFSLNCSEY*HRLLYLF 752
           ++L+  K  N+ LNC E   R+LYL+
Sbjct: 225 LHLQVEKIENYKLNCEELSQRMLYLY 250


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,358,573
Number of Sequences: 28952
Number of extensions: 269176
Number of successful extensions: 516
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)