Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00591
         (382 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    25   3.0  
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn...    25   3.0  
SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces ...    25   5.3  
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    25   5.3  
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb...    24   7.0  

>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 74  KHVITDPPDPLTVLLGTTSTGH 139
           +H++ +PP PLTVL      GH
Sbjct: 499 RHILDNPPKPLTVLDIYFQIGH 520


>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
           synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 5/16 (31%), Positives = 13/16 (81%)
 Frame = +3

Query: 213 FLVGSSQWVACPIRGR 260
           F++G ++W++C + G+
Sbjct: 364 FMIGDTEWISCKVHGQ 379


>SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 601

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -3

Query: 170 FVASDGFGEDGD 135
           +V SD FGEDGD
Sbjct: 499 YVTSDDFGEDGD 510


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -3

Query: 170 FVASDGFGEDGD 135
           +V SD FGEDGD
Sbjct: 499 YVTSDDFGEDGD 510


>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 266 AESTPDRTRDPLRRSDEKLSELCL*VNSLVEP 171
           A STP +T + L     +  E+ L  NSL+EP
Sbjct: 221 APSTPPKTVNELPEQIYEKPEIVLQPNSLIEP 252


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,324,186
Number of Sequences: 5004
Number of extensions: 22372
Number of successful extensions: 63
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)