Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00591
         (382 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0822 - 27963849-27964544,27965043-27965091,27965372-279654...    28   2.2  
02_05_0435 - 28958422-28958665,28959328-28959462,28960056-289602...    27   5.0  
01_06_1050 + 34125087-34126001,34126082-34126639                       27   6.6  
09_02_0283 + 6819086-6820270                                           26   8.7  
07_03_1494 - 26976654-26976749,26976945-26977001,26977644-269777...    26   8.7  
06_02_0001 - 10431189-10432634                                         26   8.7  

>03_05_0822 -
           27963849-27964544,27965043-27965091,27965372-27965480,
           27965979-27966006,27966086-27966276,27966418-27966532,
           27966955-27967206
          Length = 479

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 112 AFRYHKHRSPSSPNPSLATKGSTSE 186
           A +  K + PS PNPS+ +K S+S+
Sbjct: 319 ATKSQKKKRPSGPNPSIKSKASSSD 343


>02_05_0435 -
           28958422-28958665,28959328-28959462,28960056-28960211,
           28960287-28961092,28961177-28961254,28961809-28961883,
           28962127-28962215,28962735-28962843,28963007-28963086,
           28963739-28963794,28963876-28963958,28964049-28964118,
           28964200-28964309,28964395-28964548,28965183-28965382,
           28966175-28966348,28969080-28969277,28970564-28970791
          Length = 1014

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +1

Query: 61  STSPKTRHYGSSRSINGAFRYHKHRSPSSPNPSLATKGSTSELTYRH 201
           STSP    +GS        +Y++ R+   P  S+     TS+LT  H
Sbjct: 700 STSPARSSHGSLGKAAAVGQYNRRRNLGHPPISMPPHEYTSQLTQGH 746


>01_06_1050 + 34125087-34126001,34126082-34126639
          Length = 490

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 191 VNSLVEPFVASDGFGEDGDRCLWYLKA 111
           V S++E F+    F  DGD+ LW  KA
Sbjct: 114 VVSVMEDFLGHGIFNSDGDQWLWQRKA 140


>09_02_0283 + 6819086-6820270
          Length = 394

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -3

Query: 167 VASDGFGEDGDRCLWYLKAPLMDREDP**RVLGD 66
           VA D  G D D  +  LKAP + R DP    +GD
Sbjct: 117 VARDALGMDDDALVVALKAPGVWRVDPVLAAVGD 150


>07_03_1494 -
           26976654-26976749,26976945-26977001,26977644-26977712,
           26977892-26977993,26978081-26978149,26979205-26979297,
           26979908-26979959,26980549-26980635,26980720-26980802,
           26980909-26981040,26981132-26981205,26981280-26981341,
           26981428-26981513
          Length = 353

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 59  RRRRPKHVITDPPDPLT 109
           R RRP H++  PP PLT
Sbjct: 13  RLRRPLHLLHPPPPPLT 29


>06_02_0001 - 10431189-10432634
          Length = 481

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 155 GFGEDGDRCLWYLKAPLMDRED 90
           G    G R LW LK  ++DR+D
Sbjct: 309 GLEASGSRFLWILKTTVVDRDD 330


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,300,632
Number of Sequences: 37544
Number of extensions: 165628
Number of successful extensions: 492
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)