Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00591
         (382 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47491| Best HMM Match : Acyl-CoA_dh_N (HMM E-Value=0.36)            28   2.9  
SB_38582| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.2  
SB_5826| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.8  
SB_57168| Best HMM Match : DUF845 (HMM E-Value=4.1)                    26   9.0  
SB_42834| Best HMM Match : C2 (HMM E-Value=3.7e-20)                    26   9.0  

>SB_47491| Best HMM Match : Acyl-CoA_dh_N (HMM E-Value=0.36)
          Length = 431

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -1

Query: 313 SNRSVANTDPNKSSASQNLPRIGHAT 236
           + ++ A    NK+ +S +LPRIGH+T
Sbjct: 293 AQKAAAEEKKNKAFSSVHLPRIGHST 318


>SB_38582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1438

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 106 NGAFRYHKHRSPSSPNPSLATKGSTSELT 192
           N  +RYH HR  S+P+ S+ +  S   L+
Sbjct: 204 NQRYRYHAHRRRSAPSASIKSSISVKPLS 232


>SB_5826| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 402

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -3

Query: 182 LVEPFVASDGFGEDGDRCLWYLKAPLMDREDP**RVLGD--VDEFIKSTLV 36
           LV  F+A   + E  +RCL  ++A   +   P  R+L D  VDE   + L+
Sbjct: 94  LVAAFIAGSSYAESLERCLKEIQAAKKELRCPECRILVDQEVDELPSNILL 144


>SB_57168| Best HMM Match : DUF845 (HMM E-Value=4.1)
          Length = 132

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 121 YHKHRSPSSPNPS 159
           YH HR PS+P PS
Sbjct: 119 YHHHRQPSAPPPS 131


>SB_42834| Best HMM Match : C2 (HMM E-Value=3.7e-20)
          Length = 808

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +1

Query: 67  SPKTRHYGSSRSINGAFRYHKHRSPSSPNPSLATKGSTSELTY 195
           SP+ R Y      +G F Y  HR+  S  P    + STS + Y
Sbjct: 258 SPQDRLYVGGMLYDG-FPYESHRAMFSRGPPRQRRNSTSMIPY 299


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,385,598
Number of Sequences: 59808
Number of extensions: 183206
Number of successful extensions: 466
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 644574580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)