Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00591
         (382 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    27   4.5  
U29537-8|ABS83848.1|  258|Caenorhabditis elegans Hypothetical pr...    27   6.0  

>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
 Frame = +1

Query: 1   RHEDARMLRF*VTSVLLMNSSTSPKTRHYGS-SRSINGAFRYHKHRSPSSPNPSLATKGS 177
           RHE+A + +  + SV     S SP+ R   S S+S   A R        SP P  A   S
Sbjct: 279 RHEEAELRQKAIASVAARAKSGSPRRRRSPSASKSPPPARRRRSPSQSKSPAPKRAKSRS 338

Query: 178 TS 183
            S
Sbjct: 339 KS 340


>U29537-8|ABS83848.1|  258|Caenorhabditis elegans Hypothetical
           protein F28B12.1b protein.
          Length = 258

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +1

Query: 94  SRSINGAFRYHKHRSPSSPNPSLATKGSTSELTYR 198
           +RS   +  +H+  +PS P+PS++   S S+ T+R
Sbjct: 6   ARSFQISITFHRMSAPS-PSPSISRLNSNSDETFR 39


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,451,432
Number of Sequences: 27780
Number of extensions: 128667
Number of successful extensions: 343
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 343
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)