Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00591
         (382 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   1.6  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    22   2.8  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    22   2.8  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   6.5  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    21   6.5  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    20   8.5  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 37  TSVLLMNSSTSPKTRHYGSSRSIN 108
           TSV+ M+ +T P T    SS SIN
Sbjct: 844 TSVISMSGTTVPITSLPASSTSIN 867


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 9/23 (39%), Positives = 10/23 (43%)
 Frame = +1

Query: 121 YHKHRSPSSPNPSLATKGSTSEL 189
           YH +R P   N   A  G  S L
Sbjct: 24  YHPYRQPDGMNQCQAVNGHCSHL 46


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 9/23 (39%), Positives = 10/23 (43%)
 Frame = +1

Query: 121 YHKHRSPSSPNPSLATKGSTSEL 189
           YH +R P   N   A  G  S L
Sbjct: 24  YHPYRQPDGMNQCQAVNGHCSHL 46


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +1

Query: 37  TSVLLMNSSTSPK 75
           TS++LMN +T P+
Sbjct: 279 TSIILMNGTTLPQ 291


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -2

Query: 270 LRRIYPGSDTRPTEKIRRET 211
           + R  PG  T  T +++R+T
Sbjct: 135 IHRDLPGKSTTTTAEVKRDT 154


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -2

Query: 270 LRRIYPGSDTRPTEKIRRET 211
           + R  PG  T  T +++R+T
Sbjct: 135 IHRDLPGKSTTTTVEVKRDT 154


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,507
Number of Sequences: 438
Number of extensions: 1565
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9300375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)