Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00591
         (382 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g44610.1 68416.m04796 protein kinase family protein similar t...    27   5.6  
At3g47740.1 68416.m05201 ABC transporter family protein ATP bind...    26   9.7  
At1g73130.1 68414.m08456 expressed protein                             26   9.7  
At1g11905.1 68414.m01373 expressed protein                             26   9.7  
At1g02770.1 68414.m00231 expressed protein contains Pfam profile...    26   9.7  

>At3g44610.1 68416.m04796 protein kinase family protein similar to
           viroid symptom modulation protein (protein
           kinase)[Lycopersicon esculentum] gi|7672777|gb|AAF66637;
           contains protein kinase domain, Pfam:PF00069
          Length = 451

 Score = 26.6 bits (56), Expect = 5.6
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +1

Query: 52  MNSSTSPKTRHYGSSRSINGAFRYHKHRSPSSPNPSLATKGSTSELTYR 198
           +N STS  +R   S+ ++  A   H   S S   PSL +  S S+L +R
Sbjct: 24  VNRSTSSGSRSSSSAAALTPAPSAHGSFSSSKLPPSLRSSLSLSDLRFR 72


>At3g47740.1 68416.m05201 ABC transporter family protein ATP binding
           cassette transporter ABC1, Homo sapiens, PIR2:A54774
          Length = 947

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 270 LRRIYPGSDTRPTEKIRRETQ*AVSVG 190
           LR++YPG D  P +K  R    AV  G
Sbjct: 630 LRKVYPGRDGNPPKKAVRVLSLAVPSG 656


>At1g73130.1 68414.m08456 expressed protein
          Length = 646

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = -2

Query: 72  GRRRRIHQEHASNLEAQHPRILVP 1
           G  + + ++H+SN++ +H R+  P
Sbjct: 49  GESKEVAEDHSSNVQGRHDRVASP 72


>At1g11905.1 68414.m01373 expressed protein
          Length = 228

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 171 GLDERINLQTQLTEFLVGSSQW 236
           GLDE  NL  ++T F  G S W
Sbjct: 138 GLDEVKNLMEEITSFGKGKSSW 159


>At1g02770.1 68414.m00231 expressed protein contains Pfam profile
           PF04776: Protein of unknown function (DUF626)
          Length = 316

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -3

Query: 233 LRRSDEKLSELCL*VNSLVEPFVASDGFGEDG 138
           +R  D+K  ELCL V         SDGF  +G
Sbjct: 7   MRYGDDKAEELCLEVEDYWARVDESDGFDVEG 38


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,157,084
Number of Sequences: 28952
Number of extensions: 124577
Number of successful extensions: 395
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 527724392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)