Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00590
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|...   235   5e-63
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ...   235   5e-63
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L...   235   5e-63
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc...    38   0.001
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    30   0.25 
SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces...    28   1.0  
SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|c...    28   1.0  
SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr 1|||M...    28   1.3  
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    27   3.1  
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom...    26   4.1  
SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr 1|||Ma...    26   4.1  
SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyc...    25   7.1  
SPCC645.13 |||transcription elongation regulator|Schizosaccharom...    25   9.4  

>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
           ribosomal protein L8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 253

 Score =  235 bits (574), Expect = 5e-63
 Identities = 109/168 (64%), Positives = 136/168 (80%), Gaps = 1/168 (0%)
 Frame = +3

Query: 9   VRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFR 188
           +RAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA V FR
Sbjct: 5   IRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAKVAFR 63

Query: 189 DPYKFKTRKELFIAPEALHR-PIVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRG 365
           +PY ++T  E F+A E ++    VYCGK A L VGNV+PVG MPEGTI+ N+EEK GDRG
Sbjct: 64  NPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRG 123

Query: 366 RLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGG 509
            L R+SGN+  ++GH+ D  +TRVKLPSGAKKV+PSS RG+VGIVAGG
Sbjct: 124 ALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGG 171



 Score =   99 bits (238), Expect = 3e-22
 Identities = 39/46 (84%), Positives = 43/46 (93%)
 Frame = +2

Query: 509 GRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGTHQH 646
           GRIDKP+LKAGRA+HKY+VKRNCWP  RGVAMNPV+HPHGGG HQH
Sbjct: 172 GRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQH 217


>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 253

 Score =  235 bits (574), Expect = 5e-63
 Identities = 109/168 (64%), Positives = 136/168 (80%), Gaps = 1/168 (0%)
 Frame = +3

Query: 9   VRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFR 188
           +RAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA V FR
Sbjct: 5   IRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAKVAFR 63

Query: 189 DPYKFKTRKELFIAPEALHR-PIVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRG 365
           +PY ++T  E F+A E ++    VYCGK A L VGNV+PVG MPEGTI+ N+EEK GDRG
Sbjct: 64  NPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRG 123

Query: 366 RLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGG 509
            L R+SGN+  ++GH+ D  +TRVKLPSGAKKV+PSS RG+VGIVAGG
Sbjct: 124 ALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGG 171



 Score =   99 bits (238), Expect = 3e-22
 Identities = 39/46 (84%), Positives = 43/46 (93%)
 Frame = +2

Query: 509 GRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGTHQH 646
           GRIDKP+LKAGRA+HKY+VKRNCWP  RGVAMNPV+HPHGGG HQH
Sbjct: 172 GRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQH 217


>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 253

 Score =  235 bits (574), Expect = 5e-63
 Identities = 109/168 (64%), Positives = 136/168 (80%), Gaps = 1/168 (0%)
 Frame = +3

Query: 9   VRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFR 188
           +RAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA V FR
Sbjct: 5   IRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAKVAFR 63

Query: 189 DPYKFKTRKELFIAPEALHR-PIVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRG 365
           +PY ++T  E F+A E ++    VYCGK A L VGNV+PVG MPEGTI+ N+EEK GDRG
Sbjct: 64  NPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRG 123

Query: 366 RLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGG 509
            L R+SGN+  ++GH+ D  +TRVKLPSGAKKV+PSS RG+VGIVAGG
Sbjct: 124 ALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGG 171



 Score =   99 bits (238), Expect = 3e-22
 Identities = 39/46 (84%), Positives = 43/46 (93%)
 Frame = +2

Query: 509 GRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGTHQH 646
           GRIDKP+LKAGRA+HKY+VKRNCWP  RGVAMNPV+HPHGGG HQH
Sbjct: 172 GRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQH 217


>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
           L2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 318

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 14/18 (77%), Positives = 15/18 (83%)
 Frame = +2

Query: 581 PYVRGVAMNPVEHPHGGG 634
           P VRG AMNP +HPHGGG
Sbjct: 256 PTVRGTAMNPCDHPHGGG 273


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = -3

Query: 505 PATIPTMPLLLDGRTFLAPDGSFTLVRLASGLCPITVAKFPEARARRPLSPIFSSRL 335
           PAT+P          F  P   F   +L SGL    V+ +P+   +   +P   SRL
Sbjct: 246 PATVPITQAASTANAFQQPSNQFQTQKLPSGLDTRPVSSYPDELTQLESNPDSFSRL 302


>SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 147

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 515 IDKPILKAGRAYHKYKVKRNCWPYVRGVAMN 607
           ++KPI        K+K K +CW  +RG   N
Sbjct: 68  VEKPIPVTKEELAKHKTKEDCWIAIRGKVYN 98


>SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 240

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 135 DIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEALHRPIVYCG 266
           +++ +PG+  PL +  F+   K     +  I  E L+ PIV CG
Sbjct: 13  ELVKEPGKVPPLDI-DFKRSVKSSQFSQCAITDEPLYPPIVSCG 55


>SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 274

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -2

Query: 635 YHHREDALQGSWQHHVHMASSYV*PCTCGMPFQLSK*VCQYVPSSNNTDHAS 480
           YH   +   G W ++  + SS +  C CG   QL   +   + SS N DH++
Sbjct: 180 YHATSNEFPGLWCNNECIPSS-IPNCACGAKRQLEFQILPTLISSMNIDHSA 230


>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 364 PLSPIFSSRLHTMVPSGIAPTGITFPTSRVAFFPQ*TIG 248
           P++P+F SR H   P G+  T   FP     F+    IG
Sbjct: 11  PINPVFPSRAHPSPPLGL--TSNLFPIQTNKFYGNLYIG 47


>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 595

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -3

Query: 526 RFVNTSPPATIPTM-PLLLDGRTFLAPDGSFTLVRLASGLCPITVAKF 386
           RF+N +  ++     PLLLD    +    S  +V +ASG+ P+   KF
Sbjct: 120 RFINVATNSSDTVQRPLLLDLPDIVIATPSRCVVHVASGVLPLDKLKF 167


>SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 434

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
 Frame = +1

Query: 4   HEYVLSVRVPVQFSFLTRRRGKALLNF--AL*ITLNVMDTSRELLRI*SM 147
           H YVL +  P  F FL R++G  +  F   + ++  + +TS+++++  S+
Sbjct: 333 HSYVLKILNPEWFDFL-RQQGVCVSRFESGIRVSFGLYNTSKDIIKFISV 381


>SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 461

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 194 IQVQDKEGALHCSRSSTQANCLLWKESN 277
           I+V  +  A+H   S  +AN L+WK +N
Sbjct: 176 IRVLSRALAIHSDCSKGKANALIWKLAN 203


>SPCC645.13 |||transcription elongation
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 18  QRKGAGSVFVSHTKKRKGAPKLRSLD 95
           +R+G+     +HTK+ K APK    D
Sbjct: 167 KRRGSVGTTATHTKRSKNAPKTSPKD 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,978,461
Number of Sequences: 5004
Number of extensions: 65125
Number of successful extensions: 195
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)