Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00590
(648 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0812 + 23383704-23384143,23384902-23385247 235 2e-62
08_02_0603 + 19208177-19210033,19210581-19210618,19210937-192110... 32 0.34
03_03_0091 - 14371528-14372661 30 1.8
06_03_0138 + 17093196-17093325,17095704-17095804,17096224-170962... 29 2.4
06_01_0026 + 265755-265968,267319-267468,267694-267738,267786-26... 29 2.4
07_01_1201 - 11419851-11419913,11420090-11420311 29 3.2
01_07_0112 - 41149461-41151674,41151688-41153265,41154344-411555... 29 4.2
11_06_0377 - 22900042-22900452,22900527-22902236 27 9.7
>12_02_0812 + 23383704-23384143,23384902-23385247
Length = 261
Score = 235 bits (575), Expect = 2e-62
Identities = 106/168 (63%), Positives = 135/168 (80%), Gaps = 1/168 (0%)
Frame = +3
Query: 9 VRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFR 188
+RAQRKGAGSVF SHT RKG + RSLD+ ER+GY+KGVV DIIHDPGRGAPLA V FR
Sbjct: 5 IRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAKVTFR 64
Query: 189 DPYKFKTRKELFIAPEALHR-PIVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRG 365
P+++K +KELF+A E ++ VYCG++ATL +GNV+P+ ++PEG +VCN+E +GDRG
Sbjct: 65 HPFRYKHQKELFVAAEGMYTGQFVYCGRRATLSIGNVLPIRSVPEGAVVCNVEHHVGDRG 124
Query: 366 RLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGG 509
ARASG++A VI HNPD +R+KLPSGAKK++PSS R M+G VAGG
Sbjct: 125 VFARASGDYAIVISHNPDNGTSRIKLPSGAKKIVPSSCRAMIGQVAGG 172
Score = 98.3 bits (234), Expect = 5e-21
Identities = 39/46 (84%), Positives = 42/46 (91%)
Frame = +2
Query: 509 GRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGTHQH 646
GR +KP+LKAG AYHKY+VKRNCWP VRGVAMNPVEHPHGGG HQH
Sbjct: 173 GRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQH 218
>08_02_0603 +
19208177-19210033,19210581-19210618,19210937-19211059,
19211471-19211852
Length = 799
Score = 32.3 bits (70), Expect = 0.34
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +2
Query: 497 CCWRGRIDKPILKAGRAYHKYKVKR--NCWPYVRGVAMN-PVEHPHGGGT 637
CC+RG IDK L + HKY +K +C P G+ PV +G G+
Sbjct: 595 CCYRGNIDK-ALDLQQRMHKYGIKSTFSCVPLRNGMLQRLPVYFVYGDGS 643
>03_03_0091 - 14371528-14372661
Length = 377
Score = 29.9 bits (64), Expect = 1.8
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Frame = -3
Query: 508 PPATIPTMPLLLDGRTFLAPDGS-FTLVRLASGLCPITVAKFPEARARRP-LSPIFSSRL 335
PPA P D P G+ T G+ P + A A A L+P+F +
Sbjct: 254 PPAPAPAPVKAEDALPHFFPQGAAVTATAHVHGVDPASAAASAAANAEGGILAPLFKEMV 313
Query: 334 HTMVPSGIAPTGITFP 287
M+ +G+AP + P
Sbjct: 314 RAMLTAGMAPPSLEPP 329
>06_03_0138 +
17093196-17093325,17095704-17095804,17096224-17096292,
17096403-17097650,17097763-17097871,17099459-17099655,
17099732-17099842,17099927-17100079
Length = 705
Score = 29.5 bits (63), Expect = 2.4
Identities = 21/64 (32%), Positives = 29/64 (45%)
Frame = +3
Query: 165 PLAVVHFRDPYKFKTRKELFIAPEALHRPIVYCGKKATLEVGNVMPVGAMPEGTIVCNLE 344
P H + P + L I P+AL +PI Y G A L MP A+P+ NL
Sbjct: 224 PSGFPHLQQPPFLRPPHGLTI-PQALQQPIQYPGLNAPLPPFPRMPEFALPQPGSGNNLT 282
Query: 345 EKMG 356
+ +G
Sbjct: 283 QNLG 286
>06_01_0026 +
265755-265968,267319-267468,267694-267738,267786-268460,
268779-268843,268854-269073,269163-269438,269547-269663,
269776-269853,269930-270184,270235-270323,270403-270816
Length = 865
Score = 29.5 bits (63), Expect = 2.4
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +2
Query: 380 LWKLRHCDWT 409
LWK RHCDWT
Sbjct: 73 LWKCRHCDWT 82
>07_01_1201 - 11419851-11419913,11420090-11420311
Length = 94
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/58 (27%), Positives = 24/58 (41%)
Frame = -3
Query: 508 PPATIPTMPLLLDGRTFLAPDGSFTLVRLASGLCPITVAKFPEARARRPLSPIFSSRL 335
PP +P +P R+ P G +G P A R+P +P+F SR+
Sbjct: 16 PPPPLPALPQGQQWRS-TGPTGKLCFCSFPAGALPPAAGAGQPAPDRQPATPLFPSRV 72
>01_07_0112 -
41149461-41151674,41151688-41153265,41154344-41155507,
41155807-41156293,41156603-41156759,41157303-41157378
Length = 1891
Score = 28.7 bits (61), Expect = 4.2
Identities = 9/30 (30%), Positives = 14/30 (46%)
Frame = -1
Query: 411 CVQSQWRSFQRHVPDDLYHPFSLQDCTQWY 322
C W++ H+P L H + +C WY
Sbjct: 73 CSCGLWKATTHHLPSALCHGLNYVNCAMWY 102
>11_06_0377 - 22900042-22900452,22900527-22902236
Length = 706
Score = 27.5 bits (58), Expect = 9.7
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 273 ATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRL-ARASGNFATVIGHNPDAKRTRVK 440
A L+ G P+G + E VC L + D R+ A +G + G PD + RV+
Sbjct: 373 AALDDGEERPLGGLVEELFVCRLGD--DDEVRVGANHNGEGRRLRGPRPDGEEARVR 427
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,394,228
Number of Sequences: 37544
Number of extensions: 464621
Number of successful extensions: 1242
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1241
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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