Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00590
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)             267   5e-72
SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)       192   2e-49
SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44)    46   4e-05
SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)                   36   0.038
SB_36232| Best HMM Match : PTS_EIIA_1 (HMM E-Value=8.1)                32   0.35 
SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13)                 32   0.35 
SB_39055| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_55367| Best HMM Match : Granulin (HMM E-Value=0.00023)              29   3.3  
SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   3.3  
SB_31382| Best HMM Match : RVT_1 (HMM E-Value=2.2e-12)                 28   5.7  
SB_38369| Best HMM Match : E-MAP-115 (HMM E-Value=1.7)                 28   5.7  
SB_3946| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.7  
SB_33819| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_9691| Best HMM Match : 7tm_1 (HMM E-Value=9.1e-08)                  28   7.5  
SB_7638| Best HMM Match : TFIID_30kDa (HMM E-Value=3)                  28   7.5  
SB_59547| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_27413| Best HMM Match : 7tm_1 (HMM E-Value=6.5e-08)                 27   9.9  
SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score =  267 bits (655), Expect = 5e-72
 Identities = 123/168 (73%), Positives = 142/168 (84%), Gaps = 1/168 (0%)
 Frame = +3

Query: 9   VRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFR 188
           +R QRKGAGS+F SHTK RKGA  LR  DYAERHGYIKGVVK+IIHDPGRGAPLAVV FR
Sbjct: 5   IRGQRKGAGSIFTSHTKHRKGAANLRVHDYAERHGYIKGVVKEIIHDPGRGAPLAVVVFR 64

Query: 189 DPYKFKTRKELFIAPEALHR-PIVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRG 365
           DPY++K RKELF+A E ++    +YCGKKA L++GN +PVG MPEGTI+ ++EEK GDRG
Sbjct: 65  DPYRYKLRKELFVATEGMYTGQFIYCGKKAALQIGNCLPVGIMPEGTIISSVEEKTGDRG 124

Query: 366 RLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGG 509
           RLAR SGN+ATVI HN + KRTRVKLPSG KKV+PSSNR +VGIVAGG
Sbjct: 125 RLARTSGNYATVISHNVEKKRTRVKLPSGIKKVIPSSNRALVGIVAGG 172



 Score =  103 bits (247), Expect = 1e-22
 Identities = 42/46 (91%), Positives = 43/46 (93%)
 Frame = +2

Query: 509 GRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGTHQH 646
           GRIDKP+LKAGRAYHKYK KRNCWP VRGVAMNPVEHPHGGG HQH
Sbjct: 173 GRIDKPMLKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPHGGGNHQH 218


>SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)
          Length = 123

 Score =  192 bits (468), Expect = 2e-49
 Identities = 87/123 (70%), Positives = 104/123 (84%), Gaps = 1/123 (0%)
 Frame = +3

Query: 123 GVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEALHR-PIVYCGKKATLEVGNVM 299
           GVVK+IIHDPGRGAPLAVV FRDPY++K RKELF+A E ++    +YCGKKA L++GN +
Sbjct: 1   GVVKEIIHDPGRGAPLAVVVFRDPYRYKLRKELFVATEGMYTGQFIYCGKKAALQIGNCL 60

Query: 300 PVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSN 479
           PVG MPEGTI+ ++EEK GDRGRLAR SGN+ATVI HN + KRTRVKLPSG KKV+PSSN
Sbjct: 61  PVGIMPEGTIISSVEEKTGDRGRLARTSGNYATVISHNVEKKRTRVKLPSGIKKVIPSSN 120

Query: 480 RGM 488
           R +
Sbjct: 121 RAL 123


>SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44)
          Length = 222

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 6/135 (4%)
 Frame = +3

Query: 117 IKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEALHRPIVYCGKK------AT 278
           IK  V  + +DP R A +A+V          +++L IAP+ +    V    +      A 
Sbjct: 56  IKDKVLQVGYDPCRSARIALVAGNG----SNQEKLVIAPDEIQVGDVMTASRGKPESLAL 111

Query: 279 LEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAK 458
           L+ G+  P+  +P GT+V N+E   G   +LARA+G  A +I    +     V+LPS  +
Sbjct: 112 LKPGDAYPLCFLPIGTVVHNIELYPGKGAQLARAAGTSAQLIRKTNET--AVVRLPSKVE 169

Query: 459 KVLPSSNRGMVGIVA 503
           K + S     VG V+
Sbjct: 170 KEVSSKCLASVGRVS 184


>SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)
          Length = 1819

 Score = 35.5 bits (78), Expect = 0.038
 Identities = 23/47 (48%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = -3

Query: 568 FDLVLVVCPSSFQNRFVNT--SPPATIPTMPLLLDGRTFLAPDGSFT 434
           F L   V PSS QN F +   +P AT   + L+LD  TFL PDGS T
Sbjct: 114 FSLNCDVIPSS-QNAFQSFEFNPAATTTYLNLILDSETFLEPDGSAT 159


>SB_36232| Best HMM Match : PTS_EIIA_1 (HMM E-Value=8.1)
          Length = 175

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
 Frame = +3

Query: 414 PDAKRTRVKLPSGAKKV---LPSSNRGMVGIVAGGDVLTNLF*KLEGHTTSTRSNVTAGH 584
           P+A  T+V +PS A      +P S+    G V  G++L N+   + GH      NVT G 
Sbjct: 5   PNAGPTKVDIPSNAPTPGGEVPLSSEPEEGEVVDGEILGNVAPNVNGHEEIGSLNVTQGS 64

Query: 585 MYVVL 599
             V L
Sbjct: 65  KDVTL 69


>SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13)
          Length = 1463

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
 Frame = +3

Query: 414  PDAKRTRVKLPSGAKKV---LPSSNRGMVGIVAGGDVLTNLF*KLEGHTTSTRSNVTAGH 584
            P+A  T+V +PS A      +P S+    G V  G++L N+   + GH      NVT G 
Sbjct: 1191 PNAGPTKVDIPSNAPTPGGEVPLSSEPEEGEVVDGEILGNVAPNVNGHEEIGSLNVTQGS 1250

Query: 585  MYVVL 599
              V L
Sbjct: 1251 KDVTL 1255


>SB_39055| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 448

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
 Frame = -2

Query: 428 TLSIRIVSNHSGEVSRGTCQTTSITHFLFKIAHNG--TLRHSSNRHHISNFKSCFLSTIN 255
           T SI ++ + +   + GTC+     +  FK+ H     + H  + H ++N   C +  ++
Sbjct: 76  THSILVLLSAAACAANGTCEEPRRRNTFFKLKHKDRMLIDHVISSHDVTNPIHCSMECLS 135

Query: 254 NWPV*SFGSNEELLP 210
           N    SF   +++ P
Sbjct: 136 NQRCVSFNLKKQITP 150


>SB_55367| Best HMM Match : Granulin (HMM E-Value=0.00023)
          Length = 565

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
 Frame = +2

Query: 167 FGCCTLPRSIQVQDK-----EGALHCSRSSTQANC 256
           FGCC +P ++  QDK      G+L CS S   A C
Sbjct: 182 FGCCVMPNAVHCQDKWHCCPMGSL-CSSSCNFARC 215


>SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2323

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +3

Query: 369  LARASGNF--ATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGI 497
            +AR +G+F   T +    D  RTR   P   KKVL ++N G + I
Sbjct: 1469 IARRTGSFDNLTSMLRLQDTPRTRTLAPISVKKVLTATNPGQLAI 1513


>SB_31382| Best HMM Match : RVT_1 (HMM E-Value=2.2e-12)
          Length = 1799

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 431 KSKATVWSQEGSAIKQQRHGR-YCCWRGRIDKPILKAGRAYHKYKVK 568
           K K  +  ++G+ +KQ +    +  WR ++ K I  A   +++ KVK
Sbjct: 310 KIKGWIAKRQGALVKQGKESPLFKLWRDQVGKAIASAKHVFYRTKVK 356


>SB_38369| Best HMM Match : E-MAP-115 (HMM E-Value=1.7)
          Length = 412

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = -3

Query: 541 SSFQNRFVNTSPPATIPTMPLLLDGRTFLA--PDGSFTLVRLASGLCPITVAKFPEARAR 368
           S FQ   +   PP  +P  PLLL  + F    P   F L    SGL P+T ++ P  +  
Sbjct: 159 SPFQGGPLRMMPPPGMP--PLLLRPQEFSPNIPPPRFGLTGPPSGLTPLTASQMPPGQT- 215

Query: 367 RPLSP 353
            P+ P
Sbjct: 216 -PMLP 219


>SB_3946| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 870

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 431 KSKATVWSQEGSAIKQQRHGR-YCCWRGRIDKPILKAGRAYHKYKVK 568
           K K  +  ++G+ +KQ +    +  WR ++ K I  A   +++ KVK
Sbjct: 348 KIKGWIAKRQGALVKQGKESPLFKLWRDQVGKAIASAKHVFYRTKVK 394


>SB_33819| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 618

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 18/51 (35%), Positives = 30/51 (58%)
 Frame = +3

Query: 435 VKLPSGAKKVLPSSNRGMVGIVAGGDVLTNLF*KLEGHTTSTRSNVTAGHM 587
           V +   +K V  ++ + +VG+VA GD+L  ++  L    TSTR +V+  HM
Sbjct: 329 VMVTFSSKTVRQNTAQLLVGVVAVGDLLMGVYLLL---ITSTRRSVSYEHM 376


>SB_9691| Best HMM Match : 7tm_1 (HMM E-Value=9.1e-08)
          Length = 419

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 18/51 (35%), Positives = 30/51 (58%)
 Frame = +3

Query: 435 VKLPSGAKKVLPSSNRGMVGIVAGGDVLTNLF*KLEGHTTSTRSNVTAGHM 587
           V +   +K V  ++ + +VG+VA GD+L  ++  L    TSTR +V+  HM
Sbjct: 131 VMVTFSSKTVRQNTAQLLVGVVAVGDLLMGVYLLL---ITSTRRSVSYEHM 178


>SB_7638| Best HMM Match : TFIID_30kDa (HMM E-Value=3)
          Length = 314

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +1

Query: 166 LWLLYTSAIHTSSRQGRSSSLLPKLYTG--QLFIV 264
           LW LYT  +   S  G + +L+P +  G  +LF+V
Sbjct: 203 LWALYTKMLEKESSAGAAPTLVPPVLRGLTELFLV 237


>SB_59547| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1516

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 201 TCMDRGSVQQPKVHLYQGHGLY 136
           T  D G +Q P  HLY+ HG Y
Sbjct: 515 TVTDIGDLQYPVFHLYKEHGWY 536


>SB_27413| Best HMM Match : 7tm_1 (HMM E-Value=6.5e-08)
          Length = 646

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/45 (37%), Positives = 28/45 (62%)
 Frame = +3

Query: 453 AKKVLPSSNRGMVGIVAGGDVLTNLF*KLEGHTTSTRSNVTAGHM 587
           +K V  ++ + +VG+VA GD+L  ++  L    TSTR +V+  HM
Sbjct: 256 SKTVRQNTAQLLVGVVAVGDLLMGVYLLL---ITSTRRSVSYEHM 297



 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/45 (37%), Positives = 28/45 (62%)
 Frame = +3

Query: 453 AKKVLPSSNRGMVGIVAGGDVLTNLF*KLEGHTTSTRSNVTAGHM 587
           +K V  ++ + +VG+VA GD+L  ++  L    TSTR +V+  HM
Sbjct: 378 SKTVRQNTAQLLVGVVAVGDLLMGVYLLL---ITSTRRSVSYEHM 419


>SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1351

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 288 GNVMPVGAMPEGTIVCNLEEKMGDRGRLAR-ASGNFATVIG 407
           G+  PV  +P G  +C   + +G R   AR   G F ++ G
Sbjct: 737 GHSKPVDGLPRGDAICGCPKAIGRRHARARLLEGRFLSISG 777


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,149,547
Number of Sequences: 59808
Number of extensions: 522870
Number of successful extensions: 1441
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1439
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)