Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00589
(652 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch... 142 5e-35
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc... 142 5e-35
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha... 29 0.44
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch... 29 0.44
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar... 29 0.44
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha... 29 0.44
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual 29 0.58
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 27 1.8
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 27 2.3
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ... 27 2.3
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 27 3.1
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 26 4.1
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 5.4
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 25 7.2
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 25 7.2
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 7.2
SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8 |Schizo... 25 7.2
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|... 25 7.2
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 25 7.2
SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual 25 9.5
>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 142 bits (343), Expect = 5e-35
Identities = 61/75 (81%), Positives = 68/75 (90%)
Frame = +3
Query: 30 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 209
M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60
Query: 210 SSEALEAGRICCNKY 254
+SEALEA RIC NKY
Sbjct: 61 TSEALEAARICANKY 75
Score = 134 bits (325), Expect = 8e-33
Identities = 66/100 (66%), Positives = 76/100 (76%), Gaps = 1/100 (1%)
Frame = +2
Query: 254 LVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPI 433
LVK GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G VARV IGQ +
Sbjct: 76 LVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQVL 135
Query: 434 MSVRSSDRWKAQVIEALRRAKFKFPDVKRSTYQRS-GVSQ 550
MSVR+ D +A IEALRR ++KFP +R + G SQ
Sbjct: 136 MSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQ 175
Score = 57.6 bits (133), Expect = 1e-09
Identities = 23/52 (44%), Positives = 34/52 (65%)
Frame = +1
Query: 490 CQVQVPRRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 645
CQ + P +Q+I VSKKWGF++Y RDE+ + R G + DGC ++ + G L
Sbjct: 155 CQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKFLNKRGSL 206
>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 221
Score = 142 bits (343), Expect = 5e-35
Identities = 61/75 (81%), Positives = 68/75 (90%)
Frame = +3
Query: 30 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 209
M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60
Query: 210 SSEALEAGRICCNKY 254
+SEALEA RIC NKY
Sbjct: 61 TSEALEAARICANKY 75
Score = 134 bits (324), Expect = 1e-32
Identities = 66/100 (66%), Positives = 76/100 (76%), Gaps = 1/100 (1%)
Frame = +2
Query: 254 LVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPI 433
LVK GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G VARV IGQ +
Sbjct: 76 LVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQIL 135
Query: 434 MSVRSSDRWKAQVIEALRRAKFKFPDVKRSTYQRS-GVSQ 550
MSVR+ D +A IEALRR ++KFP +R + G SQ
Sbjct: 136 MSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQ 175
Score = 57.6 bits (133), Expect = 1e-09
Identities = 23/52 (44%), Positives = 34/52 (65%)
Frame = +1
Query: 490 CQVQVPRRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 645
CQ + P +Q+I VSKKWGF++Y RDE+ + R G + DGC ++ + G L
Sbjct: 155 CQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKFLNKRGSL 206
>SPBC1348.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 29.5 bits (63), Expect = 0.44
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -2
Query: 600 SEAALFTQLLKLITFILCETPLL*YVDLLTSGNLN 496
S+A F ++L FI C +P+L Y+ + GN +
Sbjct: 263 SKARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFD 297
>SPBPB2B2.19c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 29.5 bits (63), Expect = 0.44
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -2
Query: 600 SEAALFTQLLKLITFILCETPLL*YVDLLTSGNLN 496
S+A F ++L FI C +P+L Y+ + GN +
Sbjct: 263 SKARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFD 297
>SPAC977.01 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1||Partial|Manual
Length = 316
Score = 29.5 bits (63), Expect = 0.44
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -2
Query: 600 SEAALFTQLLKLITFILCETPLL*YVDLLTSGNLN 496
S+A F ++L FI C +P+L Y+ + GN +
Sbjct: 235 SKARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFD 269
>SPAC750.05c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 29.5 bits (63), Expect = 0.44
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -2
Query: 600 SEAALFTQLLKLITFILCETPLL*YVDLLTSGNLN 496
S+A F ++L FI C +P+L Y+ + GN +
Sbjct: 263 SKARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFD 297
>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 29.1 bits (62), Expect = 0.58
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +3
Query: 54 YRYCKNKPYPKSRFCRGVPDP-KIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 230
Y+ N ++FC V + KI + +KRA +D LC+ +S + E ++ +LE+
Sbjct: 34 YQKVPNSHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLES 93
Query: 231 G 233
G
Sbjct: 94 G 94
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +3
Query: 111 DPKIRIFDLGKKRATVDDFPLCV-HLVSDEYEQLSSEALEA 230
DPK+R+F KRAT + C LV+ + + S +++A
Sbjct: 320 DPKLRVFPFTTKRATHSELLRCYKELVTPKISHVDSISIKA 360
>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 557
Score = 27.1 bits (57), Expect = 2.3
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -2
Query: 276 SFPQFFTSTYCSRYVLPPKPLS-SAVHIRRTPSARTVES 163
SFPQ + ST + Y P P S S +++ P+A T+ S
Sbjct: 466 SFPQNYDSTVPAVYPYMPPPFSGSDMNVMSNPAADTLRS 504
>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 527
Score = 27.1 bits (57), Expect = 2.3
Identities = 29/86 (33%), Positives = 40/86 (46%)
Frame = +1
Query: 67 KINRIRNRGSVGVYLIPRSVSSIWVRRERPLTTFHCACTWCPTNMNS*AQRLWRQDVSAA 246
KI R+R+ SV + L S+S W R L H T + + A RL + VS
Sbjct: 340 KIKRLRSEPSVSLTL---SIS--WYERFEKL--MHAQNTMLRSAFSHVA-RLPMETVSQL 391
Query: 247 ISTRKELRKGSVPYPHETSPFPRYPH 324
+S E +P P ETSP P+ P+
Sbjct: 392 LSHYTETISQYLP-PSETSPIPKTPN 416
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 226 RQDVSAAISTRKELRKGSVPYPHET 300
+ +VSAA EL SVP+PH++
Sbjct: 320 KTNVSAAYEKPAELSSSSVPFPHKS 344
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 26.2 bits (55), Expect = 4.1
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 145 RERPLTTFHCACTWCPTNMNS 207
R RP +T H +CT+C + S
Sbjct: 459 RSRPDSTSHASCTYCVARLRS 479
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -1
Query: 403 STLRLAKRTTHPSLEPISSS 344
+T +LAKR T PSL P S+
Sbjct: 957 TTTKLAKRITQPSLSPARST 976
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2685
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -3
Query: 143 LTQIEDTDLGIRYTPTEPRFRIRFIFAVPVASCWPAPH 30
L Q++++ L + T T P +R V SC+P H
Sbjct: 408 LHQLQNSILRVNSTLTSPSLDLRLELLHDVLSCFPKKH 445
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -3
Query: 230 CLQSL*AQLFIFVGHQVHAQWKVVNGRSLLTQIEDTDLG 114
CL L L + H++ ++W+ +N R LL + + + G
Sbjct: 940 CLLPLLPALLSELDHKLVSEWRRINDRGLLVEEDAEETG 978
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.4 bits (53), Expect = 7.2
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 272 KDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMR 376
+D H+RM ++ FH IN MLS + D + MR
Sbjct: 859 EDNSHLRMSINSFH---INDMLSKSSRDNNRQLMR 890
>SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 569
Score = 25.4 bits (53), Expect = 7.2
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
Frame = -2
Query: 246 CSRYVLPP-KP-LSSAVHIRRTPSARTVESRQRS------LSSYPNRRYGSWDQVHPDRT 91
C++ + PP KP + SA+ S T E S LS +R+ +W P
Sbjct: 494 CAKKIQPPFKPSVESAIDTSNFDSEFTSEIPMDSVVADSHLSETVQQRFANWSYQRPTTI 553
Query: 90 SISDTVYFCSTGSIL 46
SD + + GS++
Sbjct: 554 DTSDDINTIAPGSVI 568
>SPAC3A12.05c |taf2||TATA-binding protein associated factor
Taf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1174
Score = 25.4 bits (53), Expect = 7.2
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +1
Query: 97 VGVYLIPRSVSSIWV 141
+GVYLIP++ S +W+
Sbjct: 394 IGVYLIPKAWSDLWL 408
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 132 DLGKKRATVDDFPLCVHLVSDEYEQL 209
++ KKRA DD + +VS EYE L
Sbjct: 1033 EIEKKRAENDDLQSKLSVVSSEYENL 1058
>SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 450
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 190 PTNMNS*AQRLWRQDVSAAISTRKELRKGSVP 285
P N+ + A+ W + A TRK + K SVP
Sbjct: 282 PENLLTIARLAWNNVTAKANDTRKSITKFSVP 313
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,951,603
Number of Sequences: 5004
Number of extensions: 64112
Number of successful extensions: 223
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -