Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00587
         (732 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    23   2.5  
AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    23   3.4  
EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive pep...    22   5.9  

>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -3

Query: 523 RAKTNPLLTHNYPIS**PRTGFVYDNGWLEIDTLYKI 413
           + +TN L TH +P    P  G +++    ++ TLYK+
Sbjct: 372 KTRTN-LPTHRHPQDEIPYCGKIFNLTTRQVRTLYKL 407


>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -2

Query: 614 RLYRIINAICRLCALFITCSP*KFSIKMQP*SKNQSF 504
           R  R I A+CRL AL    +  KFS++ Q   K Q++
Sbjct: 9   RFLRPIFAVCRLFALVPYYNFEKFSLEHQLWQKIQAW 45


>EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive
           peptide receptor 1 protein.
          Length = 374

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -1

Query: 255 NVAEVTSLSNSVINCLLLTYF 193
           ++A + S +N +I CL  T+F
Sbjct: 294 SLAPLNSAANPIIYCLFSTHF 314


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,590
Number of Sequences: 336
Number of extensions: 4166
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19571740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)