Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00587
         (732 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0531 + 18256597-18256836,18257637-18257735,18258038-182581...    30   1.6  

>08_02_0531 +
           18256597-18256836,18257637-18257735,18258038-18258184,
           18258295-18258427,18258521-18258585,18258792-18258962,
           18259095-18259199,18259495-18259602,18259792-18260088,
           18260191-18260256,18260477-18260679,18261178-18261232,
           18261318-18261503,18261701-18261985
          Length = 719

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 21/69 (30%), Positives = 36/69 (52%)
 Frame = -1

Query: 315 NSHLSSQLDDSKILTTEN*VNVAEVTSLSNSVINCLLLTYFYKNK*NSVCD*LIK*VF*T 136
           NS L   L+ S  +TT N +++    S+   ++  LL+TYF +N    V D +++ +  +
Sbjct: 518 NSRLRRALEQS--MTTLNRMSLDSDNSVDRRIVIKLLVTYFQRNHSKEVLDLMVRMLGFS 575

Query: 135 PLPKQGNGF 109
              KQ  GF
Sbjct: 576 EEDKQRIGF 584


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,242,103
Number of Sequences: 37544
Number of extensions: 355751
Number of successful extensions: 606
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)