Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00587
         (732 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12655| Best HMM Match : Astacin (HMM E-Value=0)                     30   1.7  
SB_55160| Best HMM Match : 7tm_1 (HMM E-Value=7.10038e-42)             29   2.9  
SB_38124| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  

>SB_12655| Best HMM Match : Astacin (HMM E-Value=0)
          Length = 482

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
 Frame = -3

Query: 637 AVNQKHRKGCIVLLTRSA--DFVHFS 566
           A+ + H+K C+  +TRS   DFVHFS
Sbjct: 295 AIREYHKKTCVRFVTRSTQPDFVHFS 320


>SB_55160| Best HMM Match : 7tm_1 (HMM E-Value=7.10038e-42)
          Length = 417

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +2

Query: 35  HNM-LTAVKRFFYTVECQRSKHIFQKK 112
           H M LTA+ R+F  V+ Q+ K IFQK+
Sbjct: 101 HTMALTAINRYFRIVKPQKYKRIFQKR 127


>SB_38124| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 776

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +3

Query: 102 SKKNHYPALAVGFKKLTLLINHRQNFIYFYRNRL 203
           S KN+      G + + L +NHR++ +YF+ +R+
Sbjct: 639 SNKNNLLCHPYGDQSVALWLNHRRDVVYFHDHRI 672


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,016,150
Number of Sequences: 59808
Number of extensions: 442168
Number of successful extensions: 755
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)