Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00587
         (732 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    24   1.7  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   5.2  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   9.0  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   9.0  

>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 14  EITLMTPHNMLTAVKRFFYTVECQRSKHIFQKKPL 118
           E +  T   +LT  KRF  ++E +  KH   K+ L
Sbjct: 80  ETSRHTTLGLLTKAKRFIKSLEERERKHAVHKEQL 114


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 672 SCLGTRRAACRGL*IKNIEKAVSY 601
           S L     A RGL IKN+   ++Y
Sbjct: 503 SILVATAVAARGLDIKNVSHVINY 526


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +1

Query: 607 YSLFYVFDSQPTTSGASSSQTTLNRSN 687
           YSL     + PTT  ++++ TT+++ +
Sbjct: 376 YSLVPTTTASPTTEPSTTTSTTISQKH 402


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 378 GIISFFFGNPITILYNVSISNHPLSYTN 461
           GI+     +    LY  ++S+H L+Y N
Sbjct: 249 GILGMALSHKTQNLYYSAMSSHNLNYVN 276


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,560
Number of Sequences: 438
Number of extensions: 5047
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)