Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00585
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    31   0.13 
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc...    27   2.1  
SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos...    27   2.8  
SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|ch...    27   2.8  
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex...    27   3.6  
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.4  

>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -2

Query: 523 WRHLPGAITDNTPSEDSRDSTDSAVQPPAK 434
           W H+PG IT+N  ++D+++   S V   +K
Sbjct: 128 WSHIPGMITENQTNDDAKEVNGSDVDEKSK 157


>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
            Bms1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1121

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
 Frame = +1

Query: 280  KDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQ-HGYISRQFTRRYALPEAVRL 456
            K  F   L+V  F  E  +++T  G   + G+ ++  DQ HG+    F  +  + + V L
Sbjct: 887  KKMFSSPLEVAKF--EGANIRTVSG---IRGQVKKAVDQEHGHFRATFEDKILMSDIVFL 941

Query: 457  NLWSPGCLQMVCCL 498
              W P  ++  C +
Sbjct: 942  RAWYPVQVRKFCTM 955


>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
           Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = -3

Query: 543 LRSPSTAGGTFLVRLQTTHHLKTAGTPQIQPYSLRQSVATSELTRYVTMLIFLLLVFAFN 364
           L  P   G   L  + T + L T G      +SL QSV  +   R ++   FL +V + N
Sbjct: 96  LTIPMLQGRGLLQNINTKNPLGTGGKITSAFFSLLQSVLLNHGQRSISPRNFLEIVQSLN 155

Query: 363 HDVAV 349
            D ++
Sbjct: 156 RDFSI 160


>SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 469

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
 Frame = -2

Query: 553 DRNLAFTLHCWRHLPGAITDNTPSEDSRDSTDSAV-----QPPAKRSDE*IDAICN 401
           D    F L C R L  +   N PS+ +R S   AV      PP     + +D + N
Sbjct: 69  DEGTVFGLSCTRQLNASSLKNIPSDVTRSSVQKAVVVITTSPPFGHIKDNLDIVTN 124


>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
           subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 342

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +2

Query: 482 RWCVVCNRTRKVPPAVE 532
           R+C++CN   K+ PA++
Sbjct: 152 RFCIICNYINKISPAIQ 168


>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 394

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 338 LKRRTATSWLKANTRRRKISMVTYRVNSLVATLCR 442
           LKR    S+  ANT  RK ++V       +AT C+
Sbjct: 126 LKRPAKVSFALANTPSRKGNLVPQSPRRTIATTCK 160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,812,476
Number of Sequences: 5004
Number of extensions: 56261
Number of successful extensions: 111
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)