Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00585
(731 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0545 - 15244647-15245147,15245342-15245635 35 0.077
07_01_1127 + 10456895-10457388,10457488-10458112 32 0.41
04_01_0252 - 3329712-3331061 32 0.54
08_01_0527 + 4580599-4580818,4580933-4581806,4581891-4581955,458... 31 0.94
12_02_0381 + 18376045-18376114,18376270-18376420,18376524-183766... 31 1.2
01_06_0880 + 32687018-32687060,32687142-32687219,32687323-326875... 31 1.2
09_03_0036 + 11772940-11773171,11774995-11775104 30 2.2
04_04_1106 - 30948626-30948724,30948841-30949176,30949231-309493... 29 2.9
12_02_0459 + 19267426-19267792,19268691-19268779 29 3.8
11_06_0151 - 20643032-20643085,20643202-20643307,20643415-206434... 29 3.8
10_05_0086 + 9025410-9025730,9025974-9026008,9026194-9026279,902... 29 3.8
02_02_0489 + 10869482-10871218 29 3.8
09_06_0356 - 22498300-22498350,22499251-22499425,22499543-22500786 29 5.0
03_01_0491 + 3720842-3720958,3721904-3723109 29 5.0
06_03_1053 + 27224824-27225618 28 8.8
01_01_0231 + 1951047-1951499 28 8.8
01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457 28 8.8
01_01_0229 - 1943473-1943922 28 8.8
>05_03_0545 - 15244647-15245147,15245342-15245635
Length = 264
Score = 34.7 bits (76), Expect = 0.077
Identities = 26/62 (41%), Positives = 34/62 (54%)
Frame = -2
Query: 490 TPSEDSRDSTDSAVQPPAKRSDE*IDAICNHADLSSPRVCLQPRCSRPPF*QRFLPGRNA 311
TPS++ R TDS+ AK++ I C S R CLQPR SRPP ++F GR+
Sbjct: 191 TPSQNDRPQTDSS----AKKTL--ICYNCKEPGHYS-RDCLQPRQSRPPHYRQFTRGRHP 243
Query: 310 GR 305
R
Sbjct: 244 NR 245
>07_01_1127 + 10456895-10457388,10457488-10458112
Length = 372
Score = 32.3 bits (70), Expect = 0.41
Identities = 25/62 (40%), Positives = 33/62 (53%)
Frame = -2
Query: 490 TPSEDSRDSTDSAVQPPAKRSDE*IDAICNHADLSSPRVCLQPRCSRPPF*QRFLPGRNA 311
TPS++ R TDS+ AK++ I C S R CLQPR SRPP ++F R+
Sbjct: 299 TPSQNDRPQTDSS----AKKTL--ICYNCKEPGHYS-RDCLQPRQSRPPHYRQFTRSRHP 351
Query: 310 GR 305
R
Sbjct: 352 NR 353
>04_01_0252 - 3329712-3331061
Length = 449
Score = 31.9 bits (69), Expect = 0.54
Identities = 24/62 (38%), Positives = 34/62 (54%)
Frame = -2
Query: 490 TPSEDSRDSTDSAVQPPAKRSDE*IDAICNHADLSSPRVCLQPRCSRPPF*QRFLPGRNA 311
TPS++ R TDS+ AK++ I C S R CLQPR +RPP ++F R++
Sbjct: 376 TPSQNDRPQTDSS----AKKTL--ICYNCKEPGHYS-RDCLQPRQNRPPHYRQFTRSRHS 428
Query: 310 GR 305
R
Sbjct: 429 NR 430
>08_01_0527 +
4580599-4580818,4580933-4581806,4581891-4581955,
4582055-4582110,4582955-4583058,4583310-4583382,
4583474-4583654,4584537-4584622
Length = 552
Score = 31.1 bits (67), Expect = 0.94
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 7/57 (12%)
Frame = -2
Query: 493 NTPSEDSRDSTDSAVQPPAKR-------SDE*IDAICNHADLSSPRVCLQPRCSRPP 344
+TPS D RD+ + PP +R S + + H DLS PR Q R PP
Sbjct: 156 DTPSPDPRDAAGKDLSPPRQRRRRQDTPSPKGSEVAGGHDDLSPPRKSRQQRDPSPP 212
>12_02_0381 +
18376045-18376114,18376270-18376420,18376524-18376681,
18378680-18378945,18379025-18379243,18379309-18379417,
18379488-18379603,18379935-18380033,18381447-18381556,
18382928-18383006,18383127-18383273,18383363-18383443,
18383529-18383648,18383902-18384024,18384276-18384353,
18384459-18384547,18384653-18384761,18385018-18385086,
18385200-18385310,18385657-18385712,18385808-18385985,
18386065-18386166,18386243-18386314,18386489-18386554,
18386674-18386739,18386853-18386936,18387080-18387196,
18388077-18388163,18389321-18389341
Length = 1050
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = +1
Query: 271 KSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEAV 450
+SDKDK N+D + A E + ++ E K +EK + H Y + R L E +
Sbjct: 488 ESDKDKIMCNVDEKDIA-EHLRIRLKKEQEEKEHKKKEKAEAHLYTIIKVARDEDLKEQI 546
Query: 451 RLNLW 465
N++
Sbjct: 547 GKNIY 551
>01_06_0880 +
32687018-32687060,32687142-32687219,32687323-32687532,
32687868-32689744
Length = 735
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -2
Query: 496 DNTPSEDSRDSTDSAVQPPAKRSDE*IDAICNH 398
+ T ++ RD+ D+AV+ PA SDE + C H
Sbjct: 379 ERTHTDQERDAKDAAVKDPADNSDEEKKSDCTH 411
>09_03_0036 + 11772940-11773171,11774995-11775104
Length = 113
Score = 29.9 bits (64), Expect = 2.2
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Frame = +3
Query: 324 GRNLC*NGGRLHRG*RQTRGEERSAWLH----IASIHSSLRFAGGCTAESVESRLSSDGV 491
G+NL G+ H G R+ RG+ER LH A FAGG + + ++ GV
Sbjct: 21 GQNLMDRRGKRHEGRRERRGKERGRNLHYSRCAADTTRKTIFAGGQNEFLLTANATASGV 80
>04_04_1106 -
30948626-30948724,30948841-30949176,30949231-30949353,
30949425-30949517,30949603-30949806,30949884-30950134,
30951011-30952391,30952737-30953174
Length = 974
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = -2
Query: 517 HLPGAITDNTPSEDSRDSTDSAVQPPAKRSDE*IDAICNH-ADLSSPR 377
H+P AITD+ PSE+ D + + ID I N SSPR
Sbjct: 477 HMPAAITDSEPSENEPDDLYMPSPDQSLSNSPDIDRIINSICPSSSPR 524
>12_02_0459 + 19267426-19267792,19268691-19268779
Length = 151
Score = 29.1 bits (62), Expect = 3.8
Identities = 19/57 (33%), Positives = 23/57 (40%)
Frame = +3
Query: 399 WLHIASIHSSLRFAGGCTAESVESRLSSDGVLSVIAPGRCRQQWRVNARFRSPKPDP 569
W L AGG R +SDG+ S + GR +W A SP PDP
Sbjct: 60 WRRAMGGSGGLPSAGGAAGGGASWRATSDGLPSAGSGGRGDGRWAAAA--VSPPPDP 114
>11_06_0151 -
20643032-20643085,20643202-20643307,20643415-20643495,
20643588-20643715,20643829-20643903,20644853-20645374,
20646622-20646687,20647990-20648076,20648173-20648247,
20648705-20648821,20648932-20649015,20649152-20649217,
20649352-20649417,20650079-20650150,20650231-20650332,
20650428-20650605,20650700-20650755,20653159-20653269,
20653354-20653422,20653558-20653741,20653826-20653914,
20654070-20654147,20654509-20654631,20654755-20654874,
20654975-20655055,20655285-20655431,20655533-20655611,
20657114-20657223,20659138-20659236,20659467-20659582,
20659673-20659781,20659839-20660069,20660152-20660417,
20661349-20661506,20661601-20661751,20661897-20661966,
20662203-20662232
Length = 1451
Score = 29.1 bits (62), Expect = 3.8
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = +1
Query: 271 KSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEAV 450
+SDKDK N+D + A E + V+ E K +EK + H Y + R L E +
Sbjct: 502 ESDKDKIMCNVDEKDIA-EHLRVRLKKEQEEKEHKKKEKAEAHLYTIIKVARDENLKEQI 560
Query: 451 RLNLW 465
+++
Sbjct: 561 GKDIY 565
>10_05_0086 +
9025410-9025730,9025974-9026008,9026194-9026279,
9026602-9026740,9028504-9028663
Length = 246
Score = 29.1 bits (62), Expect = 3.8
Identities = 24/59 (40%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +1
Query: 136 HGSTFRLGADS-GRFSQCCSRPPCEQRILPPVASPCCRGSSLGSSIKSDKDKFQVNLDV 309
HGST G +S GR + S PP LPP AS C SS SS S + ++ +DV
Sbjct: 36 HGSTGGGGEESSGRQATLQSSPP-----LPPPASSCALPSSWLSSTSSLLGRCRLPMDV 89
>02_02_0489 + 10869482-10871218
Length = 578
Score = 29.1 bits (62), Expect = 3.8
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = +1
Query: 247 GSSLGSSIKSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGK-HEEKKDQHGYISRQFT 423
G+ +GS K D +++ D P+E + T +G I+ G+ H+EK D+ +
Sbjct: 442 GTLVGSK-KGKADNGKLDGDTHSVMPKEATAGTQNGGILTGGENHKEKVDKDANVP-SIR 499
Query: 424 RRYALPEAVRLNLWS 468
R YA +++ NL S
Sbjct: 500 REYAELQSLYPNLAS 514
>09_06_0356 - 22498300-22498350,22499251-22499425,22499543-22500786
Length = 489
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +2
Query: 326 KKSLLKRRTATSWLKANTRRRKISMVTYRVNS 421
KKS T TS K TRRRK+++V Y S
Sbjct: 16 KKSAAGELTTTSEKKKKTRRRKVAVVYYLCRS 47
>03_01_0491 + 3720842-3720958,3721904-3723109
Length = 440
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = -2
Query: 265 WSQGSSRGSKVTPRAVVFSAHKGAGCSTEKIFRSQPQAEMLIHEATRTLNFV 110
WS +G KV A G GC K+F S+ +A+ H A +L F+
Sbjct: 379 WSLIGIKGDKV-------GADHGRGCKLAKVFESKDEAKASTHTAISSLPFM 423
>06_03_1053 + 27224824-27225618
Length = 264
Score = 27.9 bits (59), Expect = 8.8
Identities = 9/33 (27%), Positives = 17/33 (51%)
Frame = +3
Query: 405 HIASIHSSLRFAGGCTAESVESRLSSDGVLSVI 503
H+ + + GGC A +E L +D ++ V+
Sbjct: 208 HVPGLRRLVELVGGCDARRLEDMLKNDALMKVV 240
>01_01_0231 + 1951047-1951499
Length = 150
Score = 27.9 bits (59), Expect = 8.8
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 8/60 (13%)
Frame = +1
Query: 304 DVQHFAPEEISVKTADGYI-VVEGKH----EEKKDQHGYISR---QFTRRYALPEAVRLN 459
D+ EE+ V+ +G + V+ G+ E+K D+ + R QF RR+ LPE +++
Sbjct: 59 DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVD 118
>01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457
Length = 438
Score = 27.9 bits (59), Expect = 8.8
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 8/60 (13%)
Frame = +1
Query: 304 DVQHFAPEEISVKTADGYI-VVEGKH----EEKKDQHGYISR---QFTRRYALPEAVRLN 459
D+ EE+ V+ +G + V+ G+ E+K D+ + R QF RR+ LPE +++
Sbjct: 59 DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVD 118
>01_01_0229 - 1943473-1943922
Length = 149
Score = 27.9 bits (59), Expect = 8.8
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 8/60 (13%)
Frame = +1
Query: 304 DVQHFAPEEISVKTADGYI-VVEGKH----EEKKDQHGYISR---QFTRRYALPEAVRLN 459
D+ EE+ V+ +G + V+ G+ E+K D+ + R QF RR+ LPE +++
Sbjct: 58 DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVD 117
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,259,752
Number of Sequences: 37544
Number of extensions: 467580
Number of successful extensions: 1322
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1321
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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