Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00585
(731 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12) 59 4e-09
SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26) 52 5e-07
SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 48 6e-06
SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 48 6e-06
SB_21424| Best HMM Match : HSP20 (HMM E-Value=0) 47 2e-05
SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 2e-05
SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05) 47 2e-05
SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26) 46 4e-05
SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29) 45 6e-05
SB_24406| Best HMM Match : DUF536 (HMM E-Value=1.5) 31 0.73
SB_13144| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_1830| Best HMM Match : DUF331 (HMM E-Value=3.5) 30 1.7
SB_45576| Best HMM Match : LRR_1 (HMM E-Value=2.7e-14) 29 2.9
SB_75| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_44943| Best HMM Match : Peptidase_A17 (HMM E-Value=2e-06) 29 5.1
SB_20270| Best HMM Match : Flavodoxin_1 (HMM E-Value=3.1e-35) 29 5.1
SB_10655| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_54295| Best HMM Match : RVP (HMM E-Value=0.037) 28 9.0
>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
Length = 210
Score = 58.8 bits (136), Expect = 4e-09
Identities = 28/70 (40%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
Frame = +1
Query: 244 RGSSLGSSIKSDKDKFQV-NLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQF 420
R SL ++ + + DK ++ LDV+++ PEEIS+K G I ++GKH + + +HGY + +F
Sbjct: 25 RNCSLAANTEMEGDKVEIATLDVKNYRPEEISLKVEHGRIKIDGKH-KSEGEHGYETSEF 83
Query: 421 TRRYALPEAV 450
R Y LP+ V
Sbjct: 84 HRSYNLPDGV 93
>SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)
Length = 185
Score = 52.0 bits (119), Expect = 5e-07
Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Frame = +1
Query: 277 DKDKFQV-NLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEAV 450
D DKFQ+ LDV+ F PEEI+ K +G I V G + ++ G+ S++F R Y LPE V
Sbjct: 2 DADKFQIATLDVREFKPEEITCKVENGKIKVSGLQRHESEE-GFDSKEFRRCYNLPEGV 59
Score = 44.4 bits (100), Expect = 1e-04
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +1
Query: 277 DKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYI-SRQFTRRYALPEAVR 453
D KF + LDV F PEE+ VK + V + E ++HG+ +RQF R + LP V
Sbjct: 96 DDTKFTLALDVSDFKPEEVDVKVYGHELSVRARQE--CEEHGFFTARQFNRHFVLPREVD 153
Query: 454 LNLWSP 471
++ P
Sbjct: 154 MDTLVP 159
>SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 48.4 bits (110), Expect = 6e-06
Identities = 22/60 (36%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Frame = +1
Query: 274 SDKDKFQV-NLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEAV 450
++++K ++ LDV+ + PEEIS K +G++ V+G+H + G+ ++F R +ALPE V
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFALPEGV 60
Score = 42.3 bits (95), Expect = 4e-04
Identities = 21/71 (29%), Positives = 34/71 (47%)
Frame = +1
Query: 247 GSSLGSSIKSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTR 426
G G DKF + +DV F P+ I V+ ++V HE + + H Y + F R
Sbjct: 85 GPDGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNR 143
Query: 427 RYALPEAVRLN 459
++ LP V ++
Sbjct: 144 QFVLPREVDMD 154
>SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 48.4 bits (110), Expect = 6e-06
Identities = 22/60 (36%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Frame = +1
Query: 274 SDKDKFQV-NLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEAV 450
++++K ++ LDV+ + PEEIS K +G++ V+G+H + G+ ++F R +ALPE V
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFALPEGV 60
Score = 42.3 bits (95), Expect = 4e-04
Identities = 21/71 (29%), Positives = 34/71 (47%)
Frame = +1
Query: 247 GSSLGSSIKSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTR 426
G G DKF + +DV F P+ I V+ ++V HE + + H Y + F R
Sbjct: 85 GPDGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNR 143
Query: 427 RYALPEAVRLN 459
++ LP V ++
Sbjct: 144 QFVLPREVDMD 154
>SB_21424| Best HMM Match : HSP20 (HMM E-Value=0)
Length = 424
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/60 (35%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Frame = +1
Query: 274 SDKDKFQV-NLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEAV 450
++++K ++ LDV+ + PEEIS K +G++ V+G+H + G+ ++F R + LPE V
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFTLPEGV 60
Score = 46.0 bits (104), Expect = 3e-05
Identities = 21/57 (36%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Frame = +1
Query: 283 DKFQV-NLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEAV 450
D+ ++ LDV+ + PEEIS K +G++ V+G+H + G+ ++F R + LPE V
Sbjct: 239 DELEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFTLPEGV 294
Score = 42.3 bits (95), Expect = 4e-04
Identities = 21/71 (29%), Positives = 34/71 (47%)
Frame = +1
Query: 247 GSSLGSSIKSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTR 426
G G DKF + +DV F P+ I V+ ++V HE + + H Y + F R
Sbjct: 85 GPDGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNR 143
Query: 427 RYALPEAVRLN 459
++ LP V ++
Sbjct: 144 QFVLPREVDMD 154
Score = 42.3 bits (95), Expect = 4e-04
Identities = 21/71 (29%), Positives = 34/71 (47%)
Frame = +1
Query: 247 GSSLGSSIKSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTR 426
G G DKF + +DV F P+ I V+ ++V HE + + H Y + F R
Sbjct: 319 GPDGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNR 377
Query: 427 RYALPEAVRLN 459
++ LP V ++
Sbjct: 378 QFVLPREVDMD 388
>SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 760
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/60 (35%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Frame = +1
Query: 274 SDKDKFQV-NLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEAV 450
++++K ++ LDV+ + PEEIS K +G++ V+G+H + G+ ++F R + LPE V
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFTLPEGV 60
Score = 42.3 bits (95), Expect = 4e-04
Identities = 21/71 (29%), Positives = 34/71 (47%)
Frame = +1
Query: 247 GSSLGSSIKSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTR 426
G G DKF + +DV F P+ I V+ ++V HE + + H Y + F R
Sbjct: 85 GPDGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNR 143
Query: 427 RYALPEAVRLN 459
++ LP V ++
Sbjct: 144 QFVLPREVDMD 154
>SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05)
Length = 259
Score = 46.8 bits (106), Expect = 2e-05
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = +1
Query: 262 SSIKSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYI-SRQFTRRYAL 438
S+ D KF + LDV F PEE+ VK + V + E ++HG+ +RQF R + L
Sbjct: 19 SAATKDDTKFTLALDVSDFKPEEVDVKVYGHELSVRARQE--CEEHGFFTARQFNRHFVL 76
Query: 439 PEAVRL 456
P+ V++
Sbjct: 77 PQEVKI 82
>SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26)
Length = 695
Score = 45.6 bits (103), Expect = 4e-05
Identities = 22/67 (32%), Positives = 37/67 (55%)
Frame = +1
Query: 259 GSSIKSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYAL 438
G+ +S DKF + +DV+ F PE I V+ ++V HE + + H Y + F R++ L
Sbjct: 89 GAKKESKDDKFSMAMDVKGFPPEAIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFIL 147
Query: 439 PEAVRLN 459
P V ++
Sbjct: 148 PREVDMD 154
Score = 45.2 bits (102), Expect = 6e-05
Identities = 21/60 (35%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Frame = +1
Query: 274 SDKDKFQV-NLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEAV 450
++++K ++ LDV+ + PEEIS K +G + V+G+H + G+ ++F R + LPE V
Sbjct: 3 NNENKLEIAKLDVREYRPEEISFKVENGVVKVQGRH-VNEGPFGFELKEFRRTFTLPEGV 61
>SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)
Length = 189
Score = 45.2 bits (102), Expect = 6e-05
Identities = 21/63 (33%), Positives = 35/63 (55%)
Frame = +1
Query: 271 KSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEAV 450
K+ +DKF + +DV F PE I V+ ++V HE + + H Y + F R++ LP V
Sbjct: 92 KAKEDKFSMAIDVAGFPPESIKVQVLGNELLVNANHEVEHEGH-YHAMHFNRQFVLPREV 150
Query: 451 RLN 459
++
Sbjct: 151 DMD 153
Score = 44.8 bits (101), Expect = 7e-05
Identities = 19/50 (38%), Positives = 32/50 (64%)
Frame = +1
Query: 301 LDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEAV 450
LDV+ + PEEIS K +G + V+G+H + + G+ ++F R + LPE +
Sbjct: 12 LDVKEYRPEEISFKVENGVVKVQGRH-VNEGEFGFELKEFRRTFTLPEGI 60
>SB_24406| Best HMM Match : DUF536 (HMM E-Value=1.5)
Length = 436
Score = 31.5 bits (68), Expect = 0.73
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = +1
Query: 373 KHEEKKDQHGYISRQFTRRYAL 438
KHEE++D+HGY+ + T ++AL
Sbjct: 72 KHEEREDRHGYLKDKVTLQHAL 93
>SB_13144| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 30.3 bits (65), Expect = 1.7
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +1
Query: 337 VKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPE 444
+++A GY+V G H K + G + + R LP+
Sbjct: 10 IRSARGYVVTSGSHTSKSEVRGIMEETCSNRNPLPQ 45
>SB_1830| Best HMM Match : DUF331 (HMM E-Value=3.5)
Length = 326
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 214 ILPPVASPCCRGSSLGSSIKSDKDKFQVNLDVQHFAPE 327
ILPPV P S LG +KS KD+ ++++D+ +
Sbjct: 273 ILPPVVLPSLASSQLGRGLKSRKDE-KLDVDINQLTKD 309
>SB_45576| Best HMM Match : LRR_1 (HMM E-Value=2.7e-14)
Length = 829
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = -3
Query: 492 THHLKTAGTPQIQPYSLRQSVATSELTRYVTMLIFLLLVFAFNHDVAVRRFNRDF-FRGE 316
T H+ + Y++ S + L Y +L+F ++F +N +FNR F F+ E
Sbjct: 293 TDHIIHENYSRFTCYNVLSSYFSVTLCIYYILLVFCAVIFVYNCAWTYTKFNRPFDFKKE 352
Query: 315 ML 310
++
Sbjct: 353 LM 354
>SB_75| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 343
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 560 FGRSESCVHPPLLAAPSWCDYRQH 489
F R+ V+PP LA P W Y +H
Sbjct: 31 FTRTIGKVYPPTLANPDWIHYEEH 54
>SB_44943| Best HMM Match : Peptidase_A17 (HMM E-Value=2e-06)
Length = 295
Score = 28.7 bits (61), Expect = 5.1
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 553 DRNLAFTLHCWRHLPGAIT 497
+R +F CWRH PGA++
Sbjct: 247 ERQSSFDPECWRHCPGAVS 265
>SB_20270| Best HMM Match : Flavodoxin_1 (HMM E-Value=3.1e-35)
Length = 724
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -3
Query: 480 KTAGTPQI--QPYSLRQSVATSELTRYVTMLIFLLLVFAFNHD 358
KTA P QPY++++S+ T R V FL + F HD
Sbjct: 370 KTASIPNYIPQPYTIKESLLTCLDIRMVPRKAFLRTLVEFTHD 412
>SB_10655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 774
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 504 RLQTTHHLKTAGTPQIQPYSLRQSVATSELTRYVT 400
R+QTT L G P+ Y + SV T ++ R +T
Sbjct: 553 RIQTTSDLFIGGVPRKPGYGMNPSVFTGDMGRSIT 587
>SB_54295| Best HMM Match : RVP (HMM E-Value=0.037)
Length = 239
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +2
Query: 515 VPPAVEGERKIPIAQTGPVRKEVKD-QSNG 601
V P + RK+PI+ GPV++++ + + NG
Sbjct: 156 VTPVIHPPRKLPISPLGPVKEKLSEMEQNG 185
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,467,621
Number of Sequences: 59808
Number of extensions: 492976
Number of successful extensions: 1511
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1508
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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