Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00585
         (731 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g53540.1 68414.m06074 17.6 kDa class I small heat shock prote...    31   0.60 
At2g29500.1 68415.m03583 17.6 kDa class I small heat shock prote...    30   1.4  
At5g11470.1 68418.m01339 bromo-adjacent homology (BAH) domain-co...    29   4.2  
At1g07400.1 68414.m00789 17.8 kDa class I heat shock protein (HS...    28   7.3  
At2g27980.1 68415.m03391 expressed protein                             27   9.7  

>At1g53540.1 68414.m06074 17.6 kDa class I small heat shock protein
           (HSP17.6C-CI) (AA 1-156) identical to (17.6 kDa class I
           heat shock protein (HSP 17.6) (AA 1-156)(SP:P13853)
           (GI:4376161) (Arabidopsis thaliana) (Nucleic Acids Res.
           17 (19), 7995 (1989))
          Length = 157

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 8/59 (13%)
 Frame = +1

Query: 304 DVQHFAPEEISVKTADGYIV-VEGK----HEEKKDQHGYISR---QFTRRYALPEAVRL 456
           D+     EE+ V+  DG I+ + G+    +EEK D+   + R   +FTRR+ LPE  ++
Sbjct: 66  DLPGLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRLPENAKM 124


>At2g29500.1 68415.m03583 17.6 kDa class I small heat shock protein
           (HSP17.6B-CI) contains Pfam PF00011: Hsp20/alpha
           crystallin family; identified in Scharf, K-D., et al,
           Cell Stress & Chaperones (2001) 6: 225-237.
          Length = 153

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 8/60 (13%)
 Frame = +1

Query: 304 DVQHFAPEEISVKTA-DGYIVVEG-KHEEKKDQHGYISR------QFTRRYALPEAVRLN 459
           D+     EE+ V+   D  + + G +H EK+D++    R      QFTRR+ LPE V+++
Sbjct: 62  DLPGLKKEEVKVEIEEDSVLKISGERHVEKEDKNDTWHRVERSSGQFTRRFRLPENVKMD 121


>At5g11470.1 68418.m01339 bromo-adjacent homology (BAH)
           domain-containing protein contains Pfam profile PF01426:
           BAH domain
          Length = 691

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = +1

Query: 241 CRGSSLGSSIKSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQF 420
           C+ +S G   + +K  +Q+ +     A EE S K +       G H   KDQ   + +Q 
Sbjct: 235 CKENSNGCKEEKEKGHYQLAIKKSTLA-EERSNKDSGS----RGNHYNGKDQESEVKKQL 289

Query: 421 TRRYALP 441
           T++ ++P
Sbjct: 290 TKQKSMP 296


>At1g07400.1 68414.m00789 17.8 kDa class I heat shock protein
           (HSP17.8-CI) similar to 17.5 kDa class I heat shock
           protein SP:P04793 from [Glycine max]; contains Pfam
           PF00011: Hsp20/alpha crystallin family
          Length = 157

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 8/60 (13%)
 Frame = +1

Query: 304 DVQHFAPEEISVKTADGYIV-VEGKH----EEKKDQHGYISR---QFTRRYALPEAVRLN 459
           D+     EE+ V+  D  ++ + G+     EEK+D    + R   QF+R++ LPE V+++
Sbjct: 64  DLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGQFSRKFKLPENVKMD 123


>At2g27980.1 68415.m03391 expressed protein
          Length = 1037

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +1

Query: 229 ASPCCRGSSLGSSIKSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEG 372
           A PC R +   S +K +  K +VN D  H  PE+ ++ + D  + V G
Sbjct: 203 AKPCKRLTR--SMLKVEGIKSEVNADDDHVNPEKDAIGSEDNCVDVSG 248


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,420,230
Number of Sequences: 28952
Number of extensions: 332497
Number of successful extensions: 866
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)