Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00584
(738 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC16C4.03 |pin1||peptidyl-prolyl cis-trans isomerase Pin1|Schi... 107 2e-24
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 40 5e-04
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc... 35 0.014
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy... 32 0.074
SPAP14E8.03 |bos1||SNARE Bos1|Schizosaccharomyces pombe|chr 1|||... 30 0.30
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha... 29 0.91
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 29 0.91
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 28 1.2
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 28 1.6
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po... 27 2.1
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar... 27 3.7
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 27 3.7
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ... 26 6.4
SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyce... 26 6.4
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces... 26 6.4
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 26 6.4
SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 8.5
>SPCC16C4.03 |pin1||peptidyl-prolyl cis-trans isomerase
Pin1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 175
Score = 107 bits (257), Expect = 2e-24
Identities = 49/88 (55%), Positives = 61/88 (69%)
Frame = +1
Query: 247 SQGVRCSHLLVKHSGSRRPSSWREEHITRTKEEALDILQEYRRKIIDREAKFEELASTYS 426
S +R SHLLVKH SRRPSSW+EEHITR+KEEA + + Y + + +LA S
Sbjct: 64 SPKIRASHLLVKHRESRRPSSWKEEHITRSKEEARKLAEHYEQLLKSGSVSMHDLAMKES 123
Query: 427 DCSSAKRDGDLGRFKKGQMQKPFEDVAF 510
DCSSA+R G+LG F + +MQKPFED AF
Sbjct: 124 DCSSARRGGELGEFGRDEMQKPFEDAAF 151
Score = 32.7 bits (71), Expect = 0.056
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 101 LPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 193
LP+ W + SRS Y+ N T +S WE P
Sbjct: 6 LPKPWIVKISRSRNRPYFFNTETHESLWEPP 36
Score = 27.1 bits (57), Expect = 2.8
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +3
Query: 510 SLKIGQLSQPVHTDSGIHIILRTA 581
+LK G++S V T SG HII R A
Sbjct: 152 ALKPGEISGVVETSSGFHIIQRHA 175
>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 786
Score = 39.5 bits (88), Expect = 5e-04
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Frame = +2
Query: 29 RKRKNLLAFPAQRTNDMASTQEEI--LPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 193
R+ N A + M+S +++ LP GWE R++ S G TYY++ +T+ + W +P
Sbjct: 212 RQTNNTSALSNSNAHIMSSFEDQYGRLPPGWE-RRADSLGRTYYVDHNTRTTTWTRP 267
>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 767
Score = 34.7 bits (76), Expect = 0.014
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +2
Query: 101 LPEGWEARKSRSTGMTYYLNKHTKKSQWEKPGGPAS 208
LP GWE R + +T Y+++ +TK + W+ P P+S
Sbjct: 347 LPSGWEMRLT-NTARVYFVDHNTKTTTWDDPRLPSS 381
>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 411
Score = 32.3 bits (70), Expect = 0.074
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +2
Query: 101 LPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 193
LP GW K+ S G+ YY N KKS +++P
Sbjct: 5 LPPGWTEHKAPS-GIPYYWNAELKKSTYQRP 34
>SPAP14E8.03 |bos1||SNARE Bos1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 235
Score = 30.3 bits (65), Expect = 0.30
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = +1
Query: 256 VRCSHLLVKHSGSRRPSSWREEHITRTKEEALDILQEYRRKIIDREAKFEELASTYSDCS 435
+ S L + S S + E + K++A +QE+R+K + KF+EL + D +
Sbjct: 43 ISASFLSLSRSIDDYDSMVQRELVPAKKKKATIRIQEFRQKHVQLLEKFDELKAHVRDIA 102
Query: 436 SAKRDGDL 459
AK +L
Sbjct: 103 QAKNRKEL 110
>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 496
Score = 28.7 bits (61), Expect = 0.91
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 87 VEAMSLVRCAGNANRFLRFLNCRRKFLVP 1
V A+ L+R GNA L+ LN K+++P
Sbjct: 386 VRALKLIRYYGNAFDVLKALNVEEKYIIP 414
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 28.7 bits (61), Expect = 0.91
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +2
Query: 95 EILPEGWEARKSRSTGMTYYLNKHTK--KSQWEKP 193
E LP GW A+ G +Y+N+ + + QWE P
Sbjct: 8 EGLPSGWVAQWDAEYGTYFYVNESAQNPQPQWEPP 42
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 28.3 bits (60), Expect = 1.2
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 113 WEARKSRSTGMTYYLNKHTKKSQWEKP 193
W K+ + + YY N T+KS WEKP
Sbjct: 36 WHEVKTEDSRV-YYYNSVTRKSVWEKP 61
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 27.9 bits (59), Expect = 1.6
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +2
Query: 77 MASTQEEILPEGWEARKSRSTGMTYYLNKHTKKS--QWEKP 193
MA E LP GW A+ +Y+N+ K+ QWE P
Sbjct: 1 MAYQTREGLPNGWVAQWDERYKCYFYVNESDPKAKPQWECP 41
>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 549
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -2
Query: 587 SLGSSKNDMNARVSVNWLAQLSYFQGNAT 501
SL + KND+ +NWL LS+FQ N++
Sbjct: 430 SLTTDKNDLY----INWLKSLSFFQTNSS 454
>SPAC1B3.08 |||COP9 signalosome complex subunit 12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 423
Score = 26.6 bits (56), Expect = 3.7
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 394 AKFEELASTYSDCSSAKRDGDLGRFKK 474
+KF LAS Y + A + G+LG F K
Sbjct: 295 SKFPNLASVYIPLTRALKSGNLGEFGK 321
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 26.6 bits (56), Expect = 3.7
Identities = 19/56 (33%), Positives = 29/56 (51%)
Frame = +1
Query: 307 SWREEHITRTKEEALDILQEYRRKIIDREAKFEELASTYSDCSSAKRDGDLGRFKK 474
S REE IT + E LD+ + ++E+ +ELA D + ++D L FKK
Sbjct: 999 STREEKITSLRSELLDLNKRVEVLKEEKESSSKELAKQLED-AVREKDSALS-FKK 1052
>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 803
Score = 25.8 bits (54), Expect = 6.4
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 319 EHITRTKEEALDILQEYRRKI-IDREAKFEELASTYSD 429
E++ K + ++ E R + REAKFE L ++ SD
Sbjct: 761 EYVLYKKSKGSQVITEKARSNELSREAKFENLVASLSD 798
>SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 851
Score = 25.8 bits (54), Expect = 6.4
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 11 NFLLQLRKRKNLLAFPAQRTNDMASTQEEILPE 109
N LL+ +KR + F QR+ AST + L E
Sbjct: 151 NILLENKKRVSFYPFSVQRSQKFASTLKMCLEE 183
>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 476
Score = 25.8 bits (54), Expect = 6.4
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 562 ISFLELPKDCFHS*YYLKKCKTIISTYIPTISQYNQYRS 678
I +LE K F YY + C + S+++ IS N + S
Sbjct: 378 IDYLERDKKIFAKRYYRQHCALVDSSFVKDISICNIHLS 416
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 25.8 bits (54), Expect = 6.4
Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = -3
Query: 460 PNPHHVL-LMNNQNMYLPALQI 398
P P HV +M+++N YL ALQ+
Sbjct: 532 PKPSHVKNIMHHENQYLQALQL 553
>SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 481
Score = 25.4 bits (53), Expect = 8.5
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +1
Query: 610 LKKCKTIISTYIPTISQYNQYRSFLSTT*IETVFLFSSILEEV 738
+KK I+T+I +S +++ +ST T+F +S L++V
Sbjct: 342 IKKATDFITTFINKMSDVKEFKPSISTA--NTLFSIASRLKDV 382
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,890,333
Number of Sequences: 5004
Number of extensions: 54581
Number of successful extensions: 166
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -