Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00584
         (738 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578810-1|AAT07315.1|  897|Anopheles gambiae smurf protein.           46   2e-06
M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles ...    25   3.2  
AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            24   4.3  

>AY578810-1|AAT07315.1|  897|Anopheles gambiae smurf protein.
          Length = 897

 Score = 45.6 bits (103), Expect = 2e-06
 Identities = 18/35 (51%), Positives = 25/35 (71%)
 Frame = +2

Query: 101 LPEGWEARKSRSTGMTYYLNKHTKKSQWEKPGGPA 205
           LP GWE R +++ G TYY+N +TK +QW +P  PA
Sbjct: 163 LPRGWEERSAQN-GRTYYVNHYTKTTQWSRPTEPA 196



 Score = 30.3 bits (65), Expect = 0.065
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 101 LPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 193
           LP GWE RK+ S G  Y+++ + + +Q+  P
Sbjct: 376 LPHGWEQRKTAS-GRVYFVDHNNRTTQFTDP 405


>M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 975

 Score = 24.6 bits (51), Expect = 3.2
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 532 ANQFTLTLAFISFLELPKDCFHS*YYLKKCKTIISTY 642
           A  F L+L+   F  L K C+    + K C++I+S Y
Sbjct: 510 AKIFNLSLSLGVFPALWKSCWLFPVHKKGCRSIVSNY 546


>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 389  EKLNLKSWQVHILIVHQQNVMGIWVVSRKVK 481
            E+LN  S Q+ I+  HQ N    ++V R +K
Sbjct: 1172 ERLNRASNQIAIVTTHQANTTAQFLVFRCMK 1202


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 716,143
Number of Sequences: 2352
Number of extensions: 12792
Number of successful extensions: 20
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 75676146
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)