Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00582
         (685 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4UH97 Cluster: Putative uncharacterized protein; n=1; ...    34   2.8  
UniRef50_UPI0000498D8E Cluster: ATP-dependent RNA helicase; n=1;...    33   6.5  
UniRef50_Q4YAY8 Cluster: Putative uncharacterized protein; n=1; ...    33   8.6  

>UniRef50_Q4UH97 Cluster: Putative uncharacterized protein; n=1;
           Theileria annulata|Rep: Putative uncharacterized protein
           - Theileria annulata
          Length = 452

 Score = 34.3 bits (75), Expect = 2.8
 Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
 Frame = -3

Query: 566 ISLLCSAIKLCNGKGIKIGFVLCTIQKVTHCLSN--YKKLISKHLL---TFKGTLFLFNL 402
           I + C+  +L N +  KI  +L  I+K+  C  +   KKLI K L     F   LF+ NL
Sbjct: 94  ICIKCNENELINDRNYKIKKLLL-IKKIQKCFESNIIKKLIKKQLKFIEIFNKILFIINL 152

Query: 401 HNSSIFN*SQHQNYLMIIN 345
           +  +I N  Q  N L   N
Sbjct: 153 YKENIINFYQFINLLNNFN 171


>UniRef50_UPI0000498D8E Cluster: ATP-dependent RNA helicase; n=1;
           Entamoeba histolytica HM-1:IMSS|Rep: ATP-dependent RNA
           helicase - Entamoeba histolytica HM-1:IMSS
          Length = 450

 Score = 33.1 bits (72), Expect = 6.5
 Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = +1

Query: 421 VPLKVKRCFEISFL*LDRQCVTFC-IVQSTKPIFIPFPLQSLMA 549
           +P KVK C+ +++L +++QC+ FC  V  T+ IF  F    L A
Sbjct: 252 IPNKVKHCY-LTYLCINKQCIVFCGSVLRTEVIFRMFKSMELKA 294


>UniRef50_Q4YAY8 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium berghei|Rep: Putative uncharacterized protein
           - Plasmodium berghei
          Length = 894

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
 Frame = -3

Query: 527 KGIKIGFVLCTIQKVTH--CLSNYKKLISKHLLTFKGTLFLFNLHNSSIFN*SQHQNYLM 354
           K + +G V C ++K      L +YK++++  ++  +G +++FN  N  IF      NYL 
Sbjct: 1   KKLNLGMV-CNLKKKNFNLILKSYKEIVNNKIIK-EGKIYIFNNLNIPIFVSPDKSNYLF 58

Query: 353 IIN-ALVFMSFNK 318
            IN   ++   NK
Sbjct: 59  YINKKYIYFKENK 71


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 600,292,303
Number of Sequences: 1657284
Number of extensions: 10923314
Number of successful extensions: 19520
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19513
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53305790091
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)