Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00582
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces ...    26   5.8  
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    26   5.8  
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce...    26   5.8  

>SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -3

Query: 587 VSHCFASISLLCSAIKLCNGKGIKIGFVLCTIQKVTHCLS 468
           VS+C ASI +  +   + +  G  + F+L T+Q  T C++
Sbjct: 18  VSYCMASILMTLTNKYVLSSPGYNMNFLLLTVQS-TVCVA 56


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 619 FHHVLTTKYGMCLIVLLLSVYCVPPLN 539
           F+HV++ +YG+C     L V    PL+
Sbjct: 388 FYHVVSNQYGLCAFSSFLVVITKVPLH 414


>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 335

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 17/68 (25%), Positives = 34/68 (50%)
 Frame = -3

Query: 584 SHCFASISLLCSAIKLCNGKGIKIGFVLCTIQKVTHCLSNYKKLISKHLLTFKGTLFLFN 405
           S   A +++   + +L     IK   VLC I   +  LS  +   ++ ++  KG+++++N
Sbjct: 53  SSLLAFVNISPESTRLLKLVDIKRDIVLCRIFYPSPVLS-VRFTWNRLVVLIKGSIYVYN 111

Query: 404 LHNSSIFN 381
           L N  + N
Sbjct: 112 LKNMELIN 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,660,868
Number of Sequences: 5004
Number of extensions: 52051
Number of successful extensions: 103
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)