Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00582
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58750-3|AAB00643.2|  350|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z78417-9|CAI70407.1|  700|Caenorhabditis elegans Hypothetical pr...    29   3.1  

>U58750-3|AAB00643.2|  350|Caenorhabditis elegans Hypothetical
           protein F55G1.6 protein.
          Length = 350

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 25/108 (23%), Positives = 50/108 (46%), Gaps = 1/108 (0%)
 Frame = +1

Query: 46  LVFTPFKTATFISYQLFIWIFEW*FSAYLQLDTVLLISSFKILNLLTPPSIAKYRGN*RT 225
           ++F+ FK A F  +    WIF + ++ +L + +   + +     + T  S      N   
Sbjct: 166 VIFSAFKPANFTQFFKANWIFYFLYALFLGVCSTSFLFALSNSLIFTKGSGTDDDIN--- 222

Query: 226 RPHVL*QLLSTEFYVRLIFSRFQLFKKTTSVLL-KLMNTKAFIIIR*F 366
              +   LLS  F+V ++ + F + K T S+ + K   T+  +I++ F
Sbjct: 223 -KEIALSLLSVFFFVIIVSTMFCVIKYTISIAIPKFKITRGKVILKAF 269


>Z78417-9|CAI70407.1|  700|Caenorhabditis elegans Hypothetical
           protein C35C5.11 protein.
          Length = 700

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +1

Query: 28  KFISAHLVFTPFK-TATFISYQLFIWIFEW 114
           K I  H+ FT F+  A  I   L IW+F W
Sbjct: 483 KTIIPHIHFTSFQQVAVIICLSLIIWVFRW 512


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,584,525
Number of Sequences: 27780
Number of extensions: 289024
Number of successful extensions: 561
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)