Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00582
         (685 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   4.7  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              22   6.3  
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    21   8.3  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    21   8.3  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   8.3  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   8.3  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   8.3  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    21   8.3  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = +1

Query: 103 IFEW*FSAYLQLDTVLLISSFKILNLLTPPSIAKY 207
           IF W F+    L TVL+I     L   T P   KY
Sbjct: 549 IFLWIFTVACVLGTVLIILQAPSLYDTTKPIDIKY 583


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 253 TIIVTTRAA*CVNCLCI*LWRVELRDL 173
           TI+V      CVN + I   +++LRD+
Sbjct: 3   TIVVIFAFCICVNAMTIEELKIQLRDV 29


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +2

Query: 398 CED*IEKACL*KSKDVSKLVFYSWID 475
           C +  E  CL  + D SK   Y W D
Sbjct: 133 CGERTEGRCLHYTVDKSKPKVYQWFD 158


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +2

Query: 398 CED*IEKACL*KSKDVSKLVFYSWID 475
           C +  E  CL  + D SK   Y W D
Sbjct: 138 CGERTEGRCLHYTVDKSKPKVYQWFD 163


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +1

Query: 265 YVRLIFSRFQLFKKTTSVL 321
           Y+ LIF++FQ F ++  +L
Sbjct: 181 YIFLIFNQFQDFSESFQIL 199


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +1

Query: 265 YVRLIFSRFQLFKKTTSVL 321
           Y+ LIF++FQ F ++  +L
Sbjct: 181 YIFLIFNQFQDFSESFQIL 199


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +1

Query: 265 YVRLIFSRFQLFKKTTSVL 321
           Y+ LIF++FQ F ++  +L
Sbjct: 181 YIFLIFNQFQDFSESFQIL 199


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +2

Query: 398 CED*IEKACL*KSKDVSKLVFYSWID 475
           C +  E  CL  + D SK   Y W D
Sbjct: 138 CGERTEGRCLHYTVDKSKPKVYQWFD 163


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,395
Number of Sequences: 438
Number of extensions: 3709
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)