Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00581
         (753 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1592 - 34649484-34649547,34650118-34650186,34650325-346504...    29   3.0  
11_06_0358 + 22681082-22681221,22681932-22682061                       28   9.2  

>04_04_1592 -
           34649484-34649547,34650118-34650186,34650325-34650444,
           34650630-34650742,34650824-34650898,34651224-34651346,
           34651427-34651446,34652354-34652410,34652922-34653860,
           34653961-34654189,34654296-34654439,34654527-34654601,
           34655363-34655433,34656103-34656205,34656407-34656633,
           34656791-34656908,34657239-34657369,34657709-34657802
          Length = 923

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -3

Query: 310 PIMCHDSLNVKWS-VEPMEIHRGCRLLS*NIVQS 212
           PI CHD+++V WS +  + +H G +LL  +  QS
Sbjct: 279 PIRCHDTVDVGWSRLSDLNVHEG-KLLGCSFNQS 311


>11_06_0358 + 22681082-22681221,22681932-22682061
          Length = 89

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -3

Query: 301 CHDSLNVKWSVEPMEIHRGCRLLS*NIVQSLHSIETTNHL 182
           C DS   ++ V+P +  +   L +  IVQ LH+ + T+HL
Sbjct: 44  CKDSSTTRYHVDPTDPRKNVNLAAAAIVQ-LHAHKDTSHL 82


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,196,026
Number of Sequences: 37544
Number of extensions: 334233
Number of successful extensions: 456
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)