Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00581
(753 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate r... 23 2.3
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 23 2.3
L10433-1|AAA27732.1| 149|Apis mellifera transposase protein. 23 4.1
AY155490-1|AAO12861.1| 342|Apis mellifera Ammar1 transposase pr... 23 4.1
M29492-1|AAA27727.1| 74|Apis mellifera protein ( Bee homeobox-... 22 5.4
L10430-1|AAA27731.1| 150|Apis mellifera transposase protein. 22 5.4
U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodops... 22 7.1
AY855337-1|AAW47987.1| 510|Apis mellifera tyrosine hydroxylase ... 22 7.1
AY703752-1|AAU12748.1| 152|Apis mellifera long-wavelength rhodo... 22 7.1
AB073998-1|BAC76402.1| 339|Apis mellifera preprotachykinin prot... 22 7.1
AB073995-1|BAC76399.1| 301|Apis mellifera preprotachykinin prot... 22 7.1
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 21 9.4
>AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate
receptor 1 protein.
Length = 953
Score = 23.4 bits (48), Expect = 2.3
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = -3
Query: 487 LKVFLLL-RHYTQ-SHINDLLVENKMSNITC 401
L FL+L R T+ + IND + N M N+TC
Sbjct: 658 LAAFLVLERPKTKLTGINDARLRNTMENLTC 688
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 23.4 bits (48), Expect = 2.3
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -2
Query: 260 GNTSWMPPALLKHS 219
G+ SW PPA+ K S
Sbjct: 144 GDVSWKPPAIYKSS 157
>L10433-1|AAA27732.1| 149|Apis mellifera transposase protein.
Length = 149
Score = 22.6 bits (46), Expect = 4.1
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +1
Query: 709 VNSCNLKKKHDEERP 753
+NSC+L KK +E P
Sbjct: 9 INSCDLLKKRNENDP 23
>AY155490-1|AAO12861.1| 342|Apis mellifera Ammar1 transposase
protein.
Length = 342
Score = 22.6 bits (46), Expect = 4.1
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +1
Query: 709 VNSCNLKKKHDEERP 753
+NSC+L KK +E P
Sbjct: 130 INSCDLLKKRNENDP 144
>M29492-1|AAA27727.1| 74|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone H40. ).
Length = 74
Score = 22.2 bits (45), Expect = 5.4
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +1
Query: 448 ATEYNVSKAKILLICPVINLTAQITLISNQIK 543
A E + L +C +NL ++L Q+K
Sbjct: 22 ALENKFKTTRYLSVCERLNLALSLSLTETQVK 53
>L10430-1|AAA27731.1| 150|Apis mellifera transposase protein.
Length = 150
Score = 22.2 bits (45), Expect = 5.4
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +1
Query: 709 VNSCNLKKKHDEERP 753
+NSC+L KK E P
Sbjct: 9 INSCDLLKKRSENDP 23
>U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodopsin
protein.
Length = 377
Score = 21.8 bits (44), Expect = 7.1
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +3
Query: 108 GGWITIYLILSTNIAKKPNGSFV 176
G + +Y+ LST + P+ FV
Sbjct: 69 GNGMVVYIFLSTKSLRTPSNLFV 91
>AY855337-1|AAW47987.1| 510|Apis mellifera tyrosine hydroxylase
protein.
Length = 510
Score = 21.8 bits (44), Expect = 7.1
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +1
Query: 451 TEYNVSKAKILLICPVINLTAQITLISNQIKEGL 552
TE V AK + CP T Q + +++EG+
Sbjct: 65 TEEEVVLAKTIAECPESENTVQKAALVLRLREGI 98
>AY703752-1|AAU12748.1| 152|Apis mellifera long-wavelength
rhodopsin protein.
Length = 152
Score = 21.8 bits (44), Expect = 7.1
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +3
Query: 108 GGWITIYLILSTNIAKKPNGSFV 176
G + +Y+ LST + P+ FV
Sbjct: 35 GNGMVVYIFLSTKSLRTPSNLFV 57
>AB073998-1|BAC76402.1| 339|Apis mellifera preprotachykinin
protein.
Length = 339
Score = 21.8 bits (44), Expect = 7.1
Identities = 13/43 (30%), Positives = 17/43 (39%)
Frame = +3
Query: 405 VILDILFSTSKSLICD*V*CLKSKNTFNLSRYQSYCTNHLDFE 533
+ILD L K + D L+ K Y Y N D+E
Sbjct: 194 IILDALEELDKRGVMDFQIGLQRKKDTTFDDYLDYAINPFDYE 236
>AB073995-1|BAC76399.1| 301|Apis mellifera preprotachykinin
protein.
Length = 301
Score = 21.8 bits (44), Expect = 7.1
Identities = 13/43 (30%), Positives = 17/43 (39%)
Frame = +3
Query: 405 VILDILFSTSKSLICD*V*CLKSKNTFNLSRYQSYCTNHLDFE 533
+ILD L K + D L+ K Y Y N D+E
Sbjct: 194 IILDALEELDKRGVMDFQIGLQRKKDTTFDDYLDYAINPFDYE 236
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 21.4 bits (43), Expect = 9.4
Identities = 7/14 (50%), Positives = 8/14 (57%)
Frame = -2
Query: 260 GNTSWMPPALLKHS 219
G W PPA+ K S
Sbjct: 135 GRVEWKPPAIYKSS 148
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,328
Number of Sequences: 438
Number of extensions: 4084
Number of successful extensions: 14
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -