Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00581
         (753 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g23430.2 68418.m02749 transducin family protein / WD-40 repea...    30   1.9  
At5g23430.1 68418.m02748 transducin family protein / WD-40 repea...    30   1.9  
At5g08390.1 68418.m00988 transducin family protein / WD-40 repea...    29   2.5  
At3g33530.1 68416.m04290 transducin family protein / WD-40 repea...    29   3.3  

>At5g23430.2 68418.m02749 transducin family protein / WD-40 repeat
           family protein contains 6 WD-40 repeats (PF00400);
           katanin p80 subunit (GI:3005601) [Strongylocentrotus
           purpuratus]
          Length = 836

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -3

Query: 310 PIMCHDSLNVKWS-VEPMEIHRGCRLLS*NIVQS 212
           PI CHD ++V WS +  M +H G +LL  +  QS
Sbjct: 257 PIRCHDGVDVGWSRLSDMNVHEG-KLLGCSYNQS 289


>At5g23430.1 68418.m02748 transducin family protein / WD-40 repeat
           family protein contains 6 WD-40 repeats (PF00400);
           katanin p80 subunit (GI:3005601) [Strongylocentrotus
           purpuratus]
          Length = 837

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -3

Query: 310 PIMCHDSLNVKWS-VEPMEIHRGCRLLS*NIVQS 212
           PI CHD ++V WS +  M +H G +LL  +  QS
Sbjct: 257 PIRCHDGVDVGWSRLSDMNVHEG-KLLGCSYNQS 289


>At5g08390.1 68418.m00988 transducin family protein / WD-40 repeat
           family protein similar to katanin p80 subunit
           [Strongylocentrotus purpuratus] GI:3005601; contains
           Pfam profile PF00400: WD domain, G-beta repeat
          Length = 871

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = -3

Query: 310 PIMCHDSLNVKWS-VEPMEIHRG 245
           PI CHD ++V WS +  M +H G
Sbjct: 350 PIRCHDGVDVGWSNLSDMNVHEG 372


>At3g33530.1 68416.m04290 transducin family protein / WD-40 repeat
           family protein similar to WD-repeat protein 11
           (SP:Q9BZH6) {Homo sapiens}; contains Pfam PF00400: WD
           domain, G-beta repeat (4 copies, 3
           weak)|2763187|gb|T46504.1|T46504
          Length = 1345

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -1

Query: 360 TYAMDFDLIYKRYVFNCLLCVTTHSTLSGQSSLWKYIVDA 241
           T ++DFD  +  Y  + L+  TT  +LS    +WK+++ A
Sbjct: 371 TSSIDFDNPFDFYDESLLVSKTTFISLSDDGKIWKWVLSA 410


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,297,026
Number of Sequences: 28952
Number of extensions: 292482
Number of successful extensions: 472
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)