Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00580
(762 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23H4.09 |cdb4||curved DNA-binding protein Cdb4|Schizosacchar... 74 3e-14
SPBC23E6.05 |arx1||ribosomal export complex Arx1 |Schizosaccharo... 67 3e-12
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar... 35 0.015
SPAC922.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 31 0.14
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1... 28 1.7
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 27 3.9
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 3.9
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 26 5.1
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe... 26 5.1
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 26 6.7
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 6.7
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 6.7
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 25 8.9
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 25 8.9
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual 25 8.9
SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex... 25 8.9
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch... 25 8.9
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 25 8.9
>SPAC23H4.09 |cdb4||curved DNA-binding protein
Cdb4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 381
Score = 73.7 bits (173), Expect = 3e-14
Identities = 39/85 (45%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Frame = +1
Query: 259 HFSPIASEPD--YILKKGDLAKIDLGAHIDGFIAVVAHTVVVGESEVSGRAADVXXXXXX 432
H SP+ S+P+ LK GD+ KI LGAHIDGF ++VA T VV E V+G AADV
Sbjct: 91 HLSPLKSDPEANLALKSGDVVKILLGAHIDGFASLVATTTVVSEEPVTGPAADVIAAASA 150
Query: 433 XXXXXXXXXKPGTENYAVTEAIQKI 507
KPG N+ VT+ + KI
Sbjct: 151 ALKAAQRTIKPGNTNWQVTDIVDKI 175
Score = 72.9 bits (171), Expect = 4e-14
Identities = 31/56 (55%), Positives = 43/56 (76%)
Frame = +3
Query: 516 YGCKPIEGMLSHQLKQFRIDGEKSIIQNPSEAQRKEHEKATLEKYEVYAMDVLIST 683
YGCKP+ GMLSHQ ++ IDG+K +I NPS++QR E + T E+ EVY +D+L+ST
Sbjct: 179 YGCKPVAGMLSHQQEREVIDGKKQVILNPSDSQRSEMDTFTFEEGEVYGVDILVST 234
Score = 72.5 bits (170), Expect = 6e-14
Identities = 36/93 (38%), Positives = 57/93 (61%)
Frame = +2
Query: 5 TSEKEVEKTIAEDLVVTKYKLAGQIVNRVLEQVIAKCVPDASAREICEFGDKLVLEETNK 184
TSE V+ +++ V KYK+AG++ V+++V+ C P A +IC GD+L+ E K
Sbjct: 7 TSETAVDYSLSNPETVNKYKIAGEVSQNVIKKVVELCQPGAKIYDICVRGDELLNEAIKK 66
Query: 185 VFKKEKDSKKGIAFSTCVSVNNCIVTFRPLRAN 283
V+ + KD+ KGIAF T VS N+ PL+++
Sbjct: 67 VY-RTKDAYKGIAFPTAVSPNDMAAHLSPLKSD 98
>SPBC23E6.05 |arx1||ribosomal export complex Arx1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 417
Score = 66.9 bits (156), Expect = 3e-12
Identities = 30/73 (41%), Positives = 47/73 (64%)
Frame = +2
Query: 53 TKYKLAGQIVNRVLEQVIAKCVPDASAREICEFGDKLVLEETNKVFKKEKDSKKGIAFST 232
+KY+ AG +V++ QV ++CVP AS REI +GD L+ E + ++K ++ +KGIA T
Sbjct: 19 SKYRDAGALVSKAFHQVASRCVPGASTREISSYGDNLLHEYKSSIYKSQR-FEKGIAEPT 77
Query: 233 CVSVNNCIVTFRP 271
+ VNNC + P
Sbjct: 78 SICVNNCAYNYAP 90
Score = 42.3 bits (95), Expect = 7e-05
Identities = 21/66 (31%), Positives = 34/66 (51%)
Frame = +1
Query: 181 QGFQKGERLQERHCIFNMRFCEQLHCHFSPIASEPDYILKKGDLAKIDLGAHIDGFIAVV 360
Q F+KG C+ N + ++ Y L+ GD+ KI +G H DG+ A++
Sbjct: 67 QRFEKGIAEPTSICVNNCAYNYAPGPESVIAGNDNSYHLQVGDVTKISMGLHFDGYTALI 126
Query: 361 AHTVVV 378
+HT+VV
Sbjct: 127 SHTIVV 132
>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 34.7 bits (76), Expect = 0.015
Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Frame = +1
Query: 253 HC--HFSPIASEPDYILKKGDLAKIDLGAHIDGFIAVVAHTV 372
HC H++P A + ILK+ D+ K+D+G H++G I A T+
Sbjct: 175 HCAAHYTPNAGDTT-ILKEKDVMKVDIGVHVNGRIVDSAFTM 215
Score = 31.9 bits (69), Expect = 0.10
Identities = 23/78 (29%), Positives = 37/78 (47%)
Frame = +3
Query: 504 NNAEYGCKPIEGMLSHQLKQFRIDGEKSIIQNPSEAQRKEHEKATLEKYEVYAMDVLIST 683
N + K I + H L + I G KS+ P K E+ +E+ E++A++ ST
Sbjct: 264 NGKTHQVKSIRNLCGHNLDPYIIHGGKSV---PIV---KGGEEIKMEEGEIFAIETFGST 317
Query: 684 GEAVGREMDTRCTYTKKL 737
G V E D C++ K+
Sbjct: 318 GRGVVHE-DMECSHYAKI 334
>SPAC922.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 117
Score = 31.5 bits (68), Expect = 0.14
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Frame = -1
Query: 501 LNGFSDCIVLSTR---LQETKSRFTSMMSCQQNICSTSRDFTFTHNYCMSYNSYKSINVS 331
L G S I LST L + K+ + M + C S +T + N C +Y + SIN
Sbjct: 12 LLGLSTAIPLSTEADALLDRKTIYFGMKAYDDVNCKGSTSYTISFNKCQAYPNINSINAL 71
Query: 330 T 328
T
Sbjct: 72 T 72
>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
Prw1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 431
Score = 27.9 bits (59), Expect = 1.7
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = -3
Query: 751 LVHLISFLVYVHLVSISRPTASPVDIRTSIAYTSYFSSVAFS 626
L+ +S+ Y+H+ I RP AS R+ A++ SVAF+
Sbjct: 249 LLASVSYDQYLHVHDIRRPDASTKPARSVHAHSGPIHSVAFN 290
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 26.6 bits (56), Expect = 3.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 669 VLISTGEAVGREMDTRCTYTKKLMRC 746
VL +T A+ + RC +TKK M C
Sbjct: 105 VLCTTCGAIDDHISVRCPWTKKCMNC 130
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.6 bits (56), Expect = 3.9
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = -3
Query: 718 HLVSISRPTASPVDIRTSIAYTSYFSSVAFSCSLRCASDGFCIILFSP 575
H S + TASP+ +RTS ++Y + + S C S P
Sbjct: 208 HGFSNALSTASPIPVRTSSVSSTYLTQDREASSKNCLSKALAFSSIEP 255
>SPAC343.11c |msc1||multi-copy suppressor of Chk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1588
Score = 26.2 bits (55), Expect = 5.1
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 114 AFQTHQQEKYVNLAINLYWRRLTRFSKRRKTP 209
AF T +Q Y N NLY+ ++ S R TP
Sbjct: 474 AFPTSRQNAYYNDPWNLYFIHFSKLSPLRFTP 505
>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 26.2 bits (55), Expect = 5.1
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Frame = -1
Query: 540 YPQLAYNHIQHYFLNGFSDCIV-LSTRLQETKSRFTSMMS---CQQNICSTSRDFTFTHN 373
Y L +NH Y + +SDC+V + +L +S+ +++ D +F H+
Sbjct: 294 YALLQFNHETEYLIQPWSDCLVDVGFKLVNDESKDDTLVQELLSFHKFLQVVVDESFLHD 353
Query: 372 YCMSYNSYKS 343
+SY K+
Sbjct: 354 ETLSYAMRKA 363
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 25.8 bits (54), Expect = 6.7
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -3
Query: 583 FSPSIRNCFSWCESIPSIGLQPYSALFSEWLQ*LHSSQYQASGDEE 446
+ PS+R F+ IPS L+ Y + EW + +QAS + E
Sbjct: 125 YHPSLRPYFTILPLIPSDFLEHYIEGYFEWFHPVFPFIHQASFNSE 170
>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 357
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -1
Query: 372 YCMSYNSYKSINVSTKIYLG*ISF 301
YC +YKS+ + T +Y+G F
Sbjct: 144 YCRKVLTYKSLGIRTAVYVGAFCF 167
>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 681
Score = 25.8 bits (54), Expect = 6.7
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -3
Query: 163 KFIAKFTYFSC*CVWNAFCDDLLKDSVHYLSC*LV 59
K + KF+ C +++A C+D L S H C +V
Sbjct: 472 KCLNKFSQEDCQFIFDAICEDPLDVSTHRHGCCVV 506
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -3
Query: 277 SQWAKSDNAVVHRNAC*KCNAFLGVFLLFENL 182
S W K DN V +N C N ++ + FE+L
Sbjct: 655 SSWEKGDNFVTKKNVCTVMNLWVQKY-FFEDL 685
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 125 ASAREICEFGDKLVLEETNKVFKKEKD 205
++ +E FG+KL E T K+ EKD
Sbjct: 865 SNLQEKINFGNKLAKEHTEKISSLEKD 891
>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 973
Score = 25.4 bits (53), Expect = 8.9
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = -3
Query: 712 VSISRPTASPVDIRTSIAYTSYFSSVAFSCSLRCASDGFCIILFSPSIRNCFSWCES 542
V I PTA V + TS+ +SY ++VA + S G + + C S C S
Sbjct: 785 VMIVEPTAGYVTVTTSLGSSSYATTVATASG---TSTGTVLQVVPSLFPGCNSKCTS 838
>SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex
subunit Tim13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 95
Score = 25.4 bits (53), Expect = 8.9
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +2
Query: 26 KTIAEDLVVTKYKLAGQIVNRVLEQVIAKCVPD 124
K I ++L V + AG++++++ E KC+P+
Sbjct: 23 KQIRQELAVAQ---AGELISKINENCFDKCIPE 52
>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 25.4 bits (53), Expect = 8.9
Identities = 41/196 (20%), Positives = 80/196 (40%), Gaps = 12/196 (6%)
Frame = -3
Query: 736 SFLVYVHLVSISRPTASPVDIRTSIAYTSYFSSVAF-SCSLRCASD--GFCIILFSPSIR 566
+F+ +V L+S +R DI Y SY S L+ S+ + IL S+
Sbjct: 309 AFIKFVQLLSKNRNWVLMRDIVQLEEYNSYLLDHRIVSAFLKPLSEKGNYKDILSLISVW 368
Query: 565 NCFSWCESIPSIGLQPYSALFSEWLQ*LHSSQYQASGDEEPLH*HDELPTKHLQHVQRLH 386
W S+ + + ++ + + +SS + +P ++ L ++ LQ +LH
Sbjct: 369 QHSVWRPSLAYLQVVYSFSMRALLVNRQYSSAFAFFWKIDPYIRNERLVSQMLQAASQLH 428
Query: 385 FHPQLLYELQQL----*IHQCEHQDLSWLNLLFSECN-----PVRSQWAKSDNAVVHRNA 233
+H +LY + + ++DL + CN P + + + N V+ ++
Sbjct: 429 YHDLILYVINTYYSGNIMKNLGNKDLICITQSSPPCNISGIKPGSLKLSPTTNTVLAKSI 488
Query: 232 C*KCNAFLGVFLLFEN 185
C N + + L EN
Sbjct: 489 CYWLNDAMALLFLLEN 504
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 280 EPDYILKKGDLAKIDLGAHIDGFIAVVAHTVV 375
EP+Y+L G+L+ +L ID F T V
Sbjct: 382 EPEYLLMYGNLSNEELVERIDAFYMNARRTYV 413
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,226,598
Number of Sequences: 5004
Number of extensions: 67733
Number of successful extensions: 231
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -