Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00580
(762 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0633 + 16416913-16417009,16417976-16418060,16418398-164185... 66 2e-11
12_02_1200 + 26937624-26937674,26937913-26938005,26938582-269387... 33 0.19
08_02_1441 - 27116242-27116354,27116646-27116742,27116841-271170... 31 1.3
05_01_0030 + 195663-196691 30 2.3
04_04_0076 + 22558105-22558261,22558356-22558405,22559837-225600... 29 4.0
07_03_0808 - 21668100-21669092 28 9.3
06_03_0773 - 24493772-24494252,24494377-24495758 28 9.3
03_06_0090 + 31570588-31570710,31570962-31571080,31572215-315722... 28 9.3
01_07_0264 - 42388455-42388565,42388656-42388688,42388792-423889... 28 9.3
>05_03_0633 +
16416913-16417009,16417976-16418060,16418398-16418551,
16418808-16419023,16419105-16419241,16419317-16419408,
16419622-16419804,16421722-16421819,16422021-16422070,
16424605-16424756,16424944-16425069,16426315-16426523
Length = 532
Score = 66.5 bits (155), Expect = 2e-11
Identities = 35/73 (47%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Frame = +1
Query: 292 ILKKGD-LAKIDLGAHIDGFIAVVAHTVVVGESEVSGRAADVXXXXXXXXXXXXXXXKPG 468
I +KGD + D+G HIDGFIAVVAHT V+ + V+G+AADV +PG
Sbjct: 51 ICEKGDSYIRDDMGCHIDGFIAVVAHTHVIHDGAVTGKAADVLAAANTAAEVALRLVRPG 110
Query: 469 TENYAVTEAIQKI 507
+N VTEAIQK+
Sbjct: 111 KKNKDVTEAIQKV 123
Score = 64.1 bits (149), Expect = 1e-10
Identities = 34/71 (47%), Positives = 47/71 (66%)
Frame = +3
Query: 510 AEYGCKPIEGMLSHQLKQFRIDGEKSIIQNPSEAQRKEHEKATLEKYEVYAMDVLISTGE 689
A Y CK +EG+LSHQLKQF IDG K ++ + S A K + A E+ EVYA+D++ STGE
Sbjct: 125 AAYDCKIVEGVLSHQLKQFVIDGNK-VVLSVSNADTKV-DDAEFEENEVYAIDIVTSTGE 182
Query: 690 AVGREMDTRCT 722
+ +D + T
Sbjct: 183 GKPKLLDEKQT 193
Score = 45.6 bits (103), Expect = 4e-05
Identities = 21/54 (38%), Positives = 32/54 (59%)
Frame = +2
Query: 14 KEVEKTIAEDLVVTKYKLAGQIVNRVLEQVIAKCVPDASAREICEFGDKLVLEE 175
+E E ++ VVTKYK A I+N L+ V++ C P A +ICE GD + ++
Sbjct: 9 EEKELDLSSSDVVTKYKDAADIINNALKLVVSLCKPKAKIVDICEKGDSYIRDD 62
>12_02_1200 +
26937624-26937674,26937913-26938005,26938582-26938728,
26940299-26940379,26940711-26940849,26940977-26941013,
26941095-26941202,26941434-26941533,26941638-26941783,
26941862-26941953,26942086-26942180,26942435-26942531,
26942623-26942766,26942912-26943129,26943213-26943323
Length = 552
Score = 33.5 bits (73), Expect = 0.19
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +1
Query: 259 HFSPIASEPDYILKKGDLAKIDLGAHIDGFIAVVAHTV 372
H++P + + +L+ D+ K+D G HIDG+I A TV
Sbjct: 305 HWTPNSGDKT-VLQYDDVMKLDFGTHIDGYIVDCAFTV 341
Score = 28.7 bits (61), Expect = 5.3
Identities = 21/77 (27%), Positives = 36/77 (46%)
Frame = +3
Query: 504 NNAEYGCKPIEGMLSHQLKQFRIDGEKSIIQNPSEAQRKEHEKATLEKYEVYAMDVLIST 683
N + K + + H + ++I KS+ P K E+ +E+ E YA++ ST
Sbjct: 390 NGKVFQIKSVRNLNGHSIGPYQIHAGKSV---PIV---KGGEQTKMEEGEFYAIETFGST 443
Query: 684 GEAVGREMDTRCTYTKK 734
G+ RE D C++ K
Sbjct: 444 GKGFVRE-DLECSHYMK 459
>08_02_1441 -
27116242-27116354,27116646-27116742,27116841-27117058,
27117279-27117422,27117512-27117608,27117932-27118026,
27118140-27118231,27118326-27118471,27118565-27118664,
27118857-27118964,27119040-27119085,27119210-27119345,
27119847-27120044
Length = 529
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +1
Query: 259 HFSPIASEPDYILKKGDLAKIDLGAHIDGFIAVVAHTV 372
H++P + +L+ D+ K+D G HI+G+I A TV
Sbjct: 249 HWTPNGGDKT-VLQYDDVMKLDFGTHINGYIVDSAFTV 285
>05_01_0030 + 195663-196691
Length = 342
Score = 29.9 bits (64), Expect = 2.3
Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Frame = -1
Query: 273 NGRKVTMQLFTETHVENAMP-FLESFSFLKTLLVSSNTSLS---PNSHISLADASGTHFA 106
+GR V++ +F +T++ A+P + + + L+TLL+ SLS P+S +L D + +
Sbjct: 76 SGRVVSLSVFQDTNLTGAIPDAIANLTHLRTLLLHHLPSLSGPIPDSLAALTDLTHLTIS 135
Query: 105 MTCSRTRFTICPANLYLVTTKSSAIVFSTSFSLVP 1
T ANL +T + F++ L+P
Sbjct: 136 WTAVSGPVPSFLANLTSLTMLD--LSFNSLTGLIP 168
>04_04_0076 +
22558105-22558261,22558356-22558405,22559837-22560044,
22560112-22560237,22560469-22560567,22560729-22561405,
22561483-22561731,22561808-22561936,22562021-22562089,
22562183-22562256,22563086-22563098,22563361-22563468,
22563541-22563651,22563725-22563811,22564043-22564068,
22564840-22564906,22565123-22565212,22565295-22565387,
22565515-22565604,22565699-22565761,22566349-22566447
Length = 894
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -1
Query: 525 YNHIQHYFLNGFSDCIVLSTRLQETKSRFTSMMSCQQ 415
+ H+Q+ ++N S+ L T ++E KSR + Q+
Sbjct: 344 FEHLQNQYVNLISENNALQTEIEELKSRIIELQKTQE 380
>07_03_0808 - 21668100-21669092
Length = 330
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -1
Query: 168 NTSLSPNSHISLADASGTHFAMTCSRTRFTICPA 67
+ S P+S S + A+G F TC TR++ P+
Sbjct: 172 SASPRPSSPESFSSATGARFRSTCFSTRYSAIPS 205
>06_03_0773 - 24493772-24494252,24494377-24495758
Length = 620
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Frame = -3
Query: 694 TASPVDIRTSIAYTSYFSSVAFSCSLRCASDGFCI-ILFSPSIRNC 560
T P T+ Y Y + C+ C SD FC+ LF P C
Sbjct: 379 TKLPNTTWTASPYVMYERTAEERCADMCLSDCFCVAALFEPDATRC 424
>03_06_0090 +
31570588-31570710,31570962-31571080,31572215-31572284,
31572544-31573492,31574789-31575699
Length = 723
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 292 ILKKGDLAKIDLGAHIDGFIAVVAHTVVVGESEVSGR 402
++ +LA DLG +DG +AV A V+ ++E R
Sbjct: 447 VVPDDNLAAGDLGDELDGIVAVTADAEVLDDAERGAR 483
>01_07_0264 -
42388455-42388565,42388656-42388688,42388792-42388905,
42389011-42389100,42389173-42389268,42389363-42389404,
42389498-42389608,42392258-42392440,42392518-42392961
Length = 407
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +1
Query: 205 LQERHCIFNMRFCEQLHCHFSPIASEP-DYILKKGDLAK 318
++ERH + +RFC+ L+ F +P +Y +G+L K
Sbjct: 135 VKERHARYRIRFCKMLNKEFEDTMKDPAEY--SRGELLK 171
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,846,574
Number of Sequences: 37544
Number of extensions: 401277
Number of successful extensions: 1117
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1116
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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